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LOCUS KF272808 624 bp RNA linear VRL 28-SEP-2013
DEFINITION HIV-1 isolate LTS05 from India nef protein gene, complete cds
ACCESSION KF272808
VERSION KF272808.1 GI:545352762
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 624)
Show all sequences for reference 1
AUTHORS Neogi,U., Palchaudhuri,R., Bommana,S. and Shet,A.
TITLE Genetic Architecture of HIV Type 1 Nef and Tat from HLA-B57-Typed
Long-Term Survivors in an Indian Cohort of Perinatally HIV-Infected
Children.
JOURNAL AIDS Res Hum Retroviruses. 2013 Oct 5.
PUBMED 24020900
REFERENCE 2 (bases 1 to 624)
Show all sequences for reference 2
AUTHORS Neogi,U. and Shet,A.
TITLE Direct Submission
JOURNAL Submitted (16-JUN-2013) Microbiology, St. John''s Medical College,
Sarjapur Road, Bangalore, Karnataka 560034, India
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..624
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="LTS05"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="India"
/collection_date="2011"
/note="therapy naive patient; subtype: C"
CDS 1..624
/note="accessory protein"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AGW29065.1"
/db_xref="GI:545352763"
/translation="MGGKWSKGSIVGWPAVRERIRKTEPAAEGVGAASQDLDKYGALT
SSNTDTTNADCAWLRAQEEGEEVGFPVRPQVPLRPMTYKGAFDLTFFLKEKGGLEGLI
YSKKRQEILDLWVYHTQGFFPDWQNYTPGPGVRYPLTFGWCFKLVPVDPKEVEEANEG
ESNCLLHPMCQHGMDDEDREVLMWKFDSHLAHRHMARELHPEFYKDC"
BASE COUNT 206 a 126 c 166 g 126 t
ORIGIN
1 atggggggca agtggtcaaa aggcagcata gtgggatggc ctgctgtaag agaaagaata
61 agaaaaactg agccagcagc agaaggagta ggagcagcat ctcaagactt agataaatat
121 ggagcactta caagcagcaa cacagacacc actaatgctg attgtgcctg gctgagagca
181 caagaggagg gggaagaagt aggctttcca gtcagacctc aggtgccttt aagaccaatg
241 acttataaag gagcattcga tctcaccttc tttttaaaag aaaagggggg actggaaggg
301 ttaatttact ctaagaaaag gcaagagatc cttgatttgt gggtctatca cacacaaggc
361 ttcttccctg attggcaaaa ctacacacca ggaccaggag tcagataccc actgaccttt
421 gggtggtgct tcaagctagt accagttgac ccaaaggaag tagaagaggc caacgaagga
481 gaaagcaact gtttgctaca ccctatgtgc cagcatggaa tggatgatga agacagagaa
541 gtattaatgt ggaagtttga cagtcaccta gcacacagac acatggcccg cgagctacat
601 ccggagtttt acaaagactg ctga
//
last modified: Tue May 31 10:56 2022