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LOCUS	    KF272808		     624 bp    RNA     linear	VRL 28-SEP-2013
DEFINITION  HIV-1 isolate LTS05 from India nef protein gene, complete cds
ACCESSION   KF272808
VERSION     KF272808.1 GI:545352762
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 624)
            Show all sequences for reference 1
  AUTHORS   Neogi,U., Palchaudhuri,R., Bommana,S. and Shet,A.
  TITLE     Genetic Architecture of HIV Type 1 Nef and Tat from HLA-B57-Typed
	    Long-Term Survivors in an Indian Cohort of Perinatally HIV-Infected
	    Children.
  JOURNAL   AIDS Res Hum Retroviruses. 2013 Oct 5.
  PUBMED    24020900
REFERENCE   2 (bases 1 to 624)
            Show all sequences for reference 2
  AUTHORS   Neogi,U. and Shet,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2013) Microbiology, St. John''s Medical College,
	    Sarjapur Road, Bangalore, Karnataka 560034, India
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..624
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="LTS05"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="India"
		     /collection_date="2011"
		     /note="therapy naive patient; subtype: C"
     CDS	     1..624
		     /note="accessory protein"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AGW29065.1"
		     /db_xref="GI:545352763"
		     /translation="MGGKWSKGSIVGWPAVRERIRKTEPAAEGVGAASQDLDKYGALT
		     SSNTDTTNADCAWLRAQEEGEEVGFPVRPQVPLRPMTYKGAFDLTFFLKEKGGLEGLI
		     YSKKRQEILDLWVYHTQGFFPDWQNYTPGPGVRYPLTFGWCFKLVPVDPKEVEEANEG
		     ESNCLLHPMCQHGMDDEDREVLMWKFDSHLAHRHMARELHPEFYKDC"
BASE COUNT	206 a	 126 c	  166 g    126 t
ORIGIN
       1 atggggggca agtggtcaaa aggcagcata gtgggatggc ctgctgtaag agaaagaata 
      61 agaaaaactg agccagcagc agaaggagta ggagcagcat ctcaagactt agataaatat 
     121 ggagcactta caagcagcaa cacagacacc actaatgctg attgtgcctg gctgagagca 
     181 caagaggagg gggaagaagt aggctttcca gtcagacctc aggtgccttt aagaccaatg 
     241 acttataaag gagcattcga tctcaccttc tttttaaaag aaaagggggg actggaaggg 
     301 ttaatttact ctaagaaaag gcaagagatc cttgatttgt gggtctatca cacacaaggc 
     361 ttcttccctg attggcaaaa ctacacacca ggaccaggag tcagataccc actgaccttt 
     421 gggtggtgct tcaagctagt accagttgac ccaaaggaag tagaagaggc caacgaagga 
     481 gaaagcaact gtttgctaca ccctatgtgc cagcatggaa tggatgatga agacagagaa 
     541 gtattaatgt ggaagtttga cagtcaccta gcacacagac acatggcccg cgagctacat 
     601 ccggagtttt acaaagactg ctga
//
last modified: Tue May 31 10:56 2022


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