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LOCUS	    KC628842		    1131 bp    RNA     linear	VRL 07-APR-2013
DEFINITION  HIV-1 isolate H_202_09R from Botswana envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   KC628842
VERSION     KC628842.1 GI:472826459
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1131)
            Show all sequences for reference 1
  AUTHORS   Novitsky,V., Wang,R., Rossenkhan,R., Moyo,S. and Essex,M.
  TITLE     Intra-host evolutionary rates in HIV-1C env and gag during primary
	    infection.
  JOURNAL   Infect Genet Evol. 2013 Mar 20. pii: S1567-1348(13)00077-4. doi:
	    10.1016/j.meegid.2013.02.023.
  PUBMED    23523818
REFERENCE   2 (bases 1 to 1131)
            Show all sequences for reference 2
  AUTHORS   Novitsky,V., Wang,R., Rossenkhan,R., Moyo,S. and Essex,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2013) Immunology & Infectious Diseases, Harvard
	    School of Public Health; Botswana-Harvard AIDS Institute
	    Partnership, 651 Huntington Ave, Boston, MA 02115, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Novitsky,V., Moyo,S., Wang,R., Gaseitsiwe,S. and Essex,M.
  TITLE     Deciphering Multiplicity of HIV-1C Infection: Transmission of
	    Closely Related Multiple Viral Lineages.
  JOURNAL   PLoS. One.. 11(11); e0166746 (2016)
  PUBMED    27893822
COMMENT     ##Assembly-Data-START## Assembly Method SeqScape v. 2.6 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1131
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="H_202_09R"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Botswana"
		     /collection_date="13-Dec-2007"
		     /note="subtype: C"
     gene	     <1..>1131
		     /gene="env"
     CDS	     <1..>1131
		     /gene="env"
		     /note="gp120 V1-C5 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGI44850.1"
		     /db_xref="GI:472826460"
		     /translation="CTNVNVTHNNTEDNNNTTINMQEEIKNCSFNMTTELRDKEKKVY
		     ALFYKLDIVQLNGSNNQSTDYRLINCNTSTITQACPKVNFDPIPIHYCAPAGYAILKC
		     NNKTFNGTGPCQNVSTVQCTHGIKPVVSTQLLLNGSLAEEGIIIRSENLTENTKTIIV
		     HLNKSVEINCTRPNNNTRKSIRIGPGQTFYATGDIIGNIREAHCNISRDKWNETLEMV
		     KKKLEEHFPNRTISFNRSSGGDPEVTSHTFTCRGEFFYCNTSKLFNEVDTNKTGNENE
		     NITLPCRIKQIINMWQEVGRAMYAPPIAGSITCKSNITGLLLLRDGGTNTSDNNSEIF
		     RPGGGNMKDNWRSELYKYKVVEIKPLGIAPTEAKRRVVEREKR"
BASE COUNT	481 a	 181 c	  211 g    258 t
ORIGIN
       1 tgcacaaatg taaatgtaac ccataataat actgaagaca acaataatac tactattaac 
      61 atgcaggaag aaataaaaaa ttgctctttc aatatgacca cagaactaag ggataaggaa 
     121 aagaaagtat atgcactttt ctataaattg gatatagtac aacttaatgg gagtaacaac 
     181 caatctactg attatagatt aataaattgt aatacctcaa ccataacaca agcctgtcca 
     241 aaggtcaatt ttgacccaat tcctatacat tattgtgctc cagctggtta tgcgattcta 
     301 aagtgtaata ataagacatt caatgggaca ggaccatgcc agaatgtcag cacagtacaa 
     361 tgtacgcatg gaattaagcc agtggtgtca actcaactac tgttaaatgg tagcctagca 
     421 gaagaaggga taataatcag atctgaaaat ctgacagaaa ataccaaaac aataatagta 
     481 catcttaata aatctgtaga aattaactgt acaagaccca acaataatac aaggaaaagt 
     541 ataagaatag gaccaggaca aacattttat gcaacaggag acataatagg aaacataaga 
     601 gaagcacact gtaatattag tagagataaa tggaatgaaa ctttagaaat ggtaaagaaa 
     661 aaattagaag aacacttccc taatagaaca atatccttta acagatcatc aggaggggac 
     721 ccagaagtta catcacatac ctttacttgt agaggagaat ttttctattg caatacatca 
     781 aagctgttta atgaagtaga cacaaataaa acaggaaacg aaaatgaaaa catcacactc 
     841 ccatgcagaa taaaacaaat tataaacatg tggcaggagg taggacgagc aatgtatgcc 
     901 cctcccattg caggaagcat aacatgtaaa tcaaatatca caggactact attgctacgt 
     961 gatggaggca caaatacaag cgacaacaac agtgagatat tcagacctgg aggaggaaat 
    1021 atgaaggata attggagaag tgaattatat aaatataaag tggtagaaat taagccattg 
    1081 ggaatagcac caactgaggc aaaaaggaga gtggtggaaa gagagaaaag a
//
last modified: Tue May 31 10:56 2022


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