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LOCUS KC628842 1131 bp RNA linear VRL 07-APR-2013
DEFINITION HIV-1 isolate H_202_09R from Botswana envelope glycoprotein (env)
gene, partial cds
ACCESSION KC628842
VERSION KC628842.1 GI:472826459
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1131)
Show all sequences for reference 1
AUTHORS Novitsky,V., Wang,R., Rossenkhan,R., Moyo,S. and Essex,M.
TITLE Intra-host evolutionary rates in HIV-1C env and gag during primary
infection.
JOURNAL Infect Genet Evol. 2013 Mar 20. pii: S1567-1348(13)00077-4. doi:
10.1016/j.meegid.2013.02.023.
PUBMED 23523818
REFERENCE 2 (bases 1 to 1131)
Show all sequences for reference 2
AUTHORS Novitsky,V., Wang,R., Rossenkhan,R., Moyo,S. and Essex,M.
TITLE Direct Submission
JOURNAL Submitted (15-FEB-2013) Immunology & Infectious Diseases, Harvard
School of Public Health; Botswana-Harvard AIDS Institute
Partnership, 651 Huntington Ave, Boston, MA 02115, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Novitsky,V., Moyo,S., Wang,R., Gaseitsiwe,S. and Essex,M.
TITLE Deciphering Multiplicity of HIV-1C Infection: Transmission of
Closely Related Multiple Viral Lineages.
JOURNAL PLoS. One.. 11(11); e0166746 (2016)
PUBMED 27893822
COMMENT ##Assembly-Data-START## Assembly Method SeqScape v. 2.6 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1131
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="H_202_09R"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Botswana"
/collection_date="13-Dec-2007"
/note="subtype: C"
gene <1..>1131
/gene="env"
CDS <1..>1131
/gene="env"
/note="gp120 V1-C5 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGI44850.1"
/db_xref="GI:472826460"
/translation="CTNVNVTHNNTEDNNNTTINMQEEIKNCSFNMTTELRDKEKKVY
ALFYKLDIVQLNGSNNQSTDYRLINCNTSTITQACPKVNFDPIPIHYCAPAGYAILKC
NNKTFNGTGPCQNVSTVQCTHGIKPVVSTQLLLNGSLAEEGIIIRSENLTENTKTIIV
HLNKSVEINCTRPNNNTRKSIRIGPGQTFYATGDIIGNIREAHCNISRDKWNETLEMV
KKKLEEHFPNRTISFNRSSGGDPEVTSHTFTCRGEFFYCNTSKLFNEVDTNKTGNENE
NITLPCRIKQIINMWQEVGRAMYAPPIAGSITCKSNITGLLLLRDGGTNTSDNNSEIF
RPGGGNMKDNWRSELYKYKVVEIKPLGIAPTEAKRRVVEREKR"
BASE COUNT 481 a 181 c 211 g 258 t
ORIGIN
1 tgcacaaatg taaatgtaac ccataataat actgaagaca acaataatac tactattaac
61 atgcaggaag aaataaaaaa ttgctctttc aatatgacca cagaactaag ggataaggaa
121 aagaaagtat atgcactttt ctataaattg gatatagtac aacttaatgg gagtaacaac
181 caatctactg attatagatt aataaattgt aatacctcaa ccataacaca agcctgtcca
241 aaggtcaatt ttgacccaat tcctatacat tattgtgctc cagctggtta tgcgattcta
301 aagtgtaata ataagacatt caatgggaca ggaccatgcc agaatgtcag cacagtacaa
361 tgtacgcatg gaattaagcc agtggtgtca actcaactac tgttaaatgg tagcctagca
421 gaagaaggga taataatcag atctgaaaat ctgacagaaa ataccaaaac aataatagta
481 catcttaata aatctgtaga aattaactgt acaagaccca acaataatac aaggaaaagt
541 ataagaatag gaccaggaca aacattttat gcaacaggag acataatagg aaacataaga
601 gaagcacact gtaatattag tagagataaa tggaatgaaa ctttagaaat ggtaaagaaa
661 aaattagaag aacacttccc taatagaaca atatccttta acagatcatc aggaggggac
721 ccagaagtta catcacatac ctttacttgt agaggagaat ttttctattg caatacatca
781 aagctgttta atgaagtaga cacaaataaa acaggaaacg aaaatgaaaa catcacactc
841 ccatgcagaa taaaacaaat tataaacatg tggcaggagg taggacgagc aatgtatgcc
901 cctcccattg caggaagcat aacatgtaaa tcaaatatca caggactact attgctacgt
961 gatggaggca caaatacaag cgacaacaac agtgagatat tcagacctgg aggaggaaat
1021 atgaaggata attggagaag tgaattatat aaatataaag tggtagaaat taagccattg
1081 ggaatagcac caactgaggc aaaaaggaga gtggtggaaa gagagaaaag a
//
last modified: Tue May 31 10:56 2022