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LOCUS KC204795 1275 bp RNA linear VRL 30-MAR-2013
DEFINITION HIV-1 isolate Patient33 from Botswana pol protein (pol) gene,
partial cds
ACCESSION KC204795
VERSION KC204795.1 GI:470271472
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1275)
Show all sequences for reference 1
AUTHORS Souda,S., Gaseitsiwe,S., Georgette,N., Powis,K., Moremedi,D.,
Iketleng,T., Leidner,J., Moffat,C., Ogwu,A., Lockman,S., Moyo,S.,
Mmalane,M., Musonda,R., Makhema,J., Essex,M. and Shapiro,R.
TITLE No Clinically Significant Drug Resistance Mutations In HIV-1
subtype C Infected Women After Discontinuation Of NRTI-Based Or
PI-Based HAART For PMTCT In Botswana.
JOURNAL J Acquir Immune Defic Syndr. 2013 Mar 28.
PUBMED 23542639
REFERENCE 2 (bases 1 to 1275)
Show all sequences for reference 2
AUTHORS Souda,S., Gaseitsiwe,S., Georgette,N., Powis,K., Moremedi,D.,
Leidner,J., Moffat,C., Ogwu,A., Lockman,S., Moyo,S., Mmalane,M.,
Musonda,R., Makhema,J., Essex,M. and Shapiro,R.
TITLE Direct Submission
JOURNAL Submitted (26-NOV-2012) Botswana-Harvard AIDS Institute Partnership
for HIV Research and Education, Gaborone, Botswana
COMMENT ##Assembly-Data-START## Assembly Method Viroseq v. 2.8 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1275
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Patient33"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Botswana"
/collection_date="2008"
/note="subtype: C"
gene <1..>1275
/gene="pol"
CDS <1..>1275
/gene="pol"
/note="protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGI04281.1"
/db_xref="GI:470271473"
/translation="PQITLWQRPLVTIKIGGHIKEALLDTGADDTVLEEINLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
IVIYQYMDDLYVGSDLEIMQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDVV
PLTEEAELELAENREILKEPVHGVYYDPSKDLI"
BASE COUNT 508 a 206 c 269 g 292 t
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtcacaataa aaataggggg ccacataaag
61 gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 agatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag gcagtatgat
181 caaataccta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggcag aaatatgttg actcagcttg gatgcacact aaattttcca
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgaagaaatg
421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagatttttg ggaagttcaa ttaggaatac cacacccagc agggttgaaa
601 aagaaaaaat cagtgacagt actggatgta ggggatgcat atttttcagt acccttagat
661 gagagcttca ggaagtatac tgcattcact atacctagta taaacaatga aacaccaggg
721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatttt agagcccttt agagcaaaaa atccagaaat agttatctat
841 caatatatgg atgacttata tgtaggatct gatttagaaa taatgcaaca tagagcaaaa
901 atagaggagt taagagaaca cttattgaaa tggggattta ccacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaaggagagt tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaggca actgtgcaaa
1141 ctccttaggg gggccaaagc actaacagat gtagtaccac tgactgaaga agcagaatta
1201 gaattggcag aaaacaggga aattctaaaa gaaccagtac atggagtata ttatgaccca
1261 tcaaaagact tgata
//
last modified: Tue May 31 10:56 2022