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LOCUS	    KC204795		    1275 bp    RNA     linear	VRL 30-MAR-2013
DEFINITION  HIV-1 isolate Patient33 from Botswana pol protein (pol) gene,
	    partial cds
ACCESSION   KC204795
VERSION     KC204795.1 GI:470271472
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1275)
            Show all sequences for reference 1
  AUTHORS   Souda,S., Gaseitsiwe,S., Georgette,N., Powis,K., Moremedi,D.,
	    Iketleng,T., Leidner,J., Moffat,C., Ogwu,A., Lockman,S., Moyo,S.,
	    Mmalane,M., Musonda,R., Makhema,J., Essex,M. and Shapiro,R.
  TITLE     No Clinically Significant Drug Resistance Mutations In HIV-1
	    subtype C Infected Women After Discontinuation Of NRTI-Based Or
	    PI-Based HAART For PMTCT In Botswana.
  JOURNAL   J Acquir Immune Defic Syndr. 2013 Mar 28.
  PUBMED    23542639
REFERENCE   2 (bases 1 to 1275)
            Show all sequences for reference 2
  AUTHORS   Souda,S., Gaseitsiwe,S., Georgette,N., Powis,K., Moremedi,D.,
	    Leidner,J., Moffat,C., Ogwu,A., Lockman,S., Moyo,S., Mmalane,M.,
	    Musonda,R., Makhema,J., Essex,M. and Shapiro,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2012) Botswana-Harvard AIDS Institute Partnership
	    for HIV Research and Education, Gaborone, Botswana
COMMENT     ##Assembly-Data-START## Assembly Method Viroseq v. 2.8 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1275
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="Patient33"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Botswana"
		     /collection_date="2008"
		     /note="subtype: C"
     gene	     <1..>1275
		     /gene="pol"
     CDS	     <1..>1275
		     /gene="pol"
		     /note="protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGI04281.1"
		     /db_xref="GI:470271473"
		     /translation="PQITLWQRPLVTIKIGGHIKEALLDTGADDTVLEEINLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
		     IVIYQYMDDLYVGSDLEIMQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDVV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLI"
BASE COUNT	508 a	 206 c	  269 g    292 t
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtcacaataa aaataggggg ccacataaag 
      61 gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 agatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag gcagtatgat 
     181 caaataccta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggcag aaatatgttg actcagcttg gatgcacact aaattttcca 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgaagaaatg 
     421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagatttttg ggaagttcaa ttaggaatac cacacccagc agggttgaaa 
     601 aagaaaaaat cagtgacagt actggatgta ggggatgcat atttttcagt acccttagat 
     661 gagagcttca ggaagtatac tgcattcact atacctagta taaacaatga aacaccaggg 
     721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatttt agagcccttt agagcaaaaa atccagaaat agttatctat 
     841 caatatatgg atgacttata tgtaggatct gatttagaaa taatgcaaca tagagcaaaa 
     901 atagaggagt taagagaaca cttattgaaa tggggattta ccacaccaga caagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctgccaga aaaggagagt tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaggca actgtgcaaa 
    1141 ctccttaggg gggccaaagc actaacagat gtagtaccac tgactgaaga agcagaatta 
    1201 gaattggcag aaaacaggga aattctaaaa gaaccagtac atggagtata ttatgaccca 
    1261 tcaaaagact tgata
//
last modified: Tue May 31 10:56 2022


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