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LOCUS KC204764 1302 bp RNA linear VRL 30-MAR-2013
DEFINITION HIV-1 isolate Patient2 from Botswana pol protein (pol) gene,
partial cds
ACCESSION KC204764
VERSION KC204764.1 GI:470271410
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Souda,S., Gaseitsiwe,S., Georgette,N., Powis,K., Moremedi,D.,
Iketleng,T., Leidner,J., Moffat,C., Ogwu,A., Lockman,S., Moyo,S.,
Mmalane,M., Musonda,R., Makhema,J., Essex,M. and Shapiro,R.
TITLE No Clinically Significant Drug Resistance Mutations In HIV-1
subtype C Infected Women After Discontinuation Of NRTI-Based Or
PI-Based HAART For PMTCT In Botswana.
JOURNAL J Acquir Immune Defic Syndr. 2013 Mar 28.
PUBMED 23542639
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Souda,S., Gaseitsiwe,S., Georgette,N., Powis,K., Moremedi,D.,
Leidner,J., Moffat,C., Ogwu,A., Lockman,S., Moyo,S., Mmalane,M.,
Musonda,R., Makhema,J., Essex,M. and Shapiro,R.
TITLE Direct Submission
JOURNAL Submitted (26-NOV-2012) Botswana-Harvard AIDS Institute Partnership
for HIV Research and Education, Gaborone, Botswana
COMMENT ##Assembly-Data-START## Assembly Method Viroseq v. 2.8 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Patient2"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Botswana"
/collection_date="2008"
/note="subtype: C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGI04250.1"
/db_xref="GI:470271411"
/translation="PQITLWQRPLVTIKIGGQIKEALLDTGADDTVLEEMNLPGKWKP
KMIGGIGGFIKVRQYDQISIEICGKKAIGTVLXGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPG
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLQWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDIV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIDEIQKQGQI"
BASE COUNT 523 a 209 c 280 g 289 t 1 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtcacaataa agataggggg ccaaataaag
61 gaagctctat tagacacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaataagta tagaaatttg tggaaaaaaa gctataggta cagtattaat rggacctaca
241 cctgtcaaca taattggaag gaatatgttg actcagattg ggtgcacact aaattttcca
301 attagcccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagaaatatg tgaagaaatg
421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tacaaagtgg agaaaattag tagacttcag ggaactcaat
541 aaaagaactc aagacttttg ggaagttcaa ttagggatac cacacccagc agggttaaag
601 aagaaaaaat cagtgacagt actagatgtg ggggatgcat atttttcagt tcctttagat
661 gaagacttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg
721 attagatatc aatataatgt tcttccacag ggatggaaag gatcaccagc aatatttcaa
781 agtagcatga caaaaatctt agagcccttt agggcacaaa acccaggaat agtcatctat
841 caatatatgg atgatttgta tgtaggatct gatttagaaa tagggcaaca tagagcaaaa
901 atagaagagt taagagaaca cctattgcaa tggggattca ccacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctataa agctgccaga aaaggaaagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa attgggccag tcagatttat gcagggatta aagtaaggca actatgtaaa
1141 ctccttaggg gggccaaagc actaacagac atagtaccac taactgaaga agcagaatta
1201 gaattggcag agaacaggga gattctaaaa gaaccagtac atggggtata ttatgaccca
1261 tcaaaagact tgatagatga aatacagaaa caggggcaaa tc
//
last modified: Tue May 31 10:56 2022