HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    KC204764		    1302 bp    RNA     linear	VRL 30-MAR-2013
DEFINITION  HIV-1 isolate Patient2 from Botswana pol protein (pol) gene,
	    partial cds
ACCESSION   KC204764
VERSION     KC204764.1 GI:470271410
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Souda,S., Gaseitsiwe,S., Georgette,N., Powis,K., Moremedi,D.,
	    Iketleng,T., Leidner,J., Moffat,C., Ogwu,A., Lockman,S., Moyo,S.,
	    Mmalane,M., Musonda,R., Makhema,J., Essex,M. and Shapiro,R.
  TITLE     No Clinically Significant Drug Resistance Mutations In HIV-1
	    subtype C Infected Women After Discontinuation Of NRTI-Based Or
	    PI-Based HAART For PMTCT In Botswana.
  JOURNAL   J Acquir Immune Defic Syndr. 2013 Mar 28.
  PUBMED    23542639
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Souda,S., Gaseitsiwe,S., Georgette,N., Powis,K., Moremedi,D.,
	    Leidner,J., Moffat,C., Ogwu,A., Lockman,S., Moyo,S., Mmalane,M.,
	    Musonda,R., Makhema,J., Essex,M. and Shapiro,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2012) Botswana-Harvard AIDS Institute Partnership
	    for HIV Research and Education, Gaborone, Botswana
COMMENT     ##Assembly-Data-START## Assembly Method Viroseq v. 2.8 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="Patient2"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Botswana"
		     /collection_date="2008"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGI04250.1"
		     /db_xref="GI:470271411"
		     /translation="PQITLWQRPLVTIKIGGQIKEALLDTGADDTVLEEMNLPGKWKP
		     KMIGGIGGFIKVRQYDQISIEICGKKAIGTVLXGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPG
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLQWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDIV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIDEIQKQGQI"
BASE COUNT	523 a	 209 c	  280 g    289 t      1 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtcacaataa agataggggg ccaaataaag 
      61 gaagctctat tagacacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaataagta tagaaatttg tggaaaaaaa gctataggta cagtattaat rggacctaca 
     241 cctgtcaaca taattggaag gaatatgttg actcagattg ggtgcacact aaattttcca 
     301 attagcccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagaaatatg tgaagaaatg 
     421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tacaaagtgg agaaaattag tagacttcag ggaactcaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttagggatac cacacccagc agggttaaag 
     601 aagaaaaaat cagtgacagt actagatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaagacttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg 
     721 attagatatc aatataatgt tcttccacag ggatggaaag gatcaccagc aatatttcaa 
     781 agtagcatga caaaaatctt agagcccttt agggcacaaa acccaggaat agtcatctat 
     841 caatatatgg atgatttgta tgtaggatct gatttagaaa tagggcaaca tagagcaaaa 
     901 atagaagagt taagagaaca cctattgcaa tggggattca ccacaccaga caagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctataa agctgccaga aaaggaaagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa attgggccag tcagatttat gcagggatta aagtaaggca actatgtaaa 
    1141 ctccttaggg gggccaaagc actaacagac atagtaccac taactgaaga agcagaatta 
    1201 gaattggcag agaacaggga gattctaaaa gaaccagtac atggggtata ttatgaccca 
    1261 tcaaaagact tgatagatga aatacagaaa caggggcaaa tc
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.