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LOCUS KC203158 680 bp RNA linear VRL 19-FEB-2013
DEFINITION HIV-1 isolate 2011.ANHUI.XCg51 from China gag protein (gag) gene,
partial cds
ACCESSION KC203158
VERSION KC203158.1 GI:451317296
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 680)
Show all sequences for reference 1
AUTHORS Wu,J., Meng,Z., Xu,J., Lei,Y., Jin,L., Zhong,P., Han,R. and Su,B.
TITLE New Emerging Recombinant HIV-1 Strains and Close Transmission
Linkage of HIV-1 Strains in the Chinese MSM Population Indicate a
New Epidemic Risk
JOURNAL PLoS ONE 8 (1), E54322 (2013)
PUBMED 23372706
REFERENCE 2 (bases 1 to 680)
Show all sequences for reference 2
AUTHORS Wu,J., Meng,Z., Xu,J., Lei,Y., Jin,L., Zhong,P., Han,R., Hna,R. and
Su,B.
TITLE Direct Submission
JOURNAL Submitted (19-NOV-2012) Anhui Provincial Center for Disease Control
and Prevention, Hefei, Anhui 230032, China
COMMENT ##Assembly-Data-START## Assembly Method Seuqncher v. 5 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..680
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2011.ANHUI.XCg51"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="China"
/collection_date="2011"
/note="genotype: CRF01_AE"
gene <1..>680
/gene="gag"
CDS <1..>680
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AGF35400.1"
/db_xref="GI:451317297"
/translation="LSGGKLDAWEKIRLRPGGKKKYRXKHIVWASRELEXFALNPGLL
ESAEGCQQJJEQLQXTLKTGSEELKSLFNLIVVLWCVHQRIEIXDTKEALDKLEEVQN
KSQQKTQQAAAGTGXSSKVSQNYPIVQNAQGQMVHQXVSPRTLNAWVKVVEEKGFNPE
VIPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKETINEEAADWDRTHPVQAGPIPP
GQIREPRG"
BASE COUNT 263 a 119 c 158 g 124 t 16 other
ORIGIN
1 attaagtggg ggaaaattag atgcatggga gaaaattcgg ttacggccag ggggaaagaa
61 aaaatatagg atraaacata tagtatgggc aagcagggag ttggaaarat tcgcactyaa
121 ccctggyctg ttagaatcag cagaaggatg tcaacaamta wtagarcagt tacarycaac
181 tctcaagaca ggatcagaag aacttaaatc attatttaat ctaatagtag tcctttggtg
241 tgtacaccaa agratagaga taaragacac caaggaagct ttagataaac tagaggaagt
301 acaaaataag agccagcaaa agacacagca ggcagcagct ggcacaggaa rcagcagcaa
361 agtcagccaa aattacccta tagtacaaaa tgcacaaggg caaatggtac atcagyctgt
421 atcacctaga actttaaatg catgggtaaa agtagtagaa gaaaagggtt ttaacccaga
481 agtaataccc atgttctcag cattatcaga gggagccacc ccacaagatt taaatatgat
541 gytaaatata gtggggggac aycaggcagc aatgcaaatg ttaaargaaa ccatcaatga
601 agaagccgca gactgggata ggacacaccc agtacaggca ggacctattc caccaggcca
661 gataagggaa ccaaggggaa
//
last modified: Tue May 31 10:56 2022