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LOCUS KC203139 692 bp RNA linear VRL 19-FEB-2013
DEFINITION HIV-1 isolate 2011.ANHUI.HNg8 from China gag protein (gag) gene,
partial cds
ACCESSION KC203139
VERSION KC203139.1 GI:451317258
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 692)
Show all sequences for reference 1
AUTHORS Wu,J., Meng,Z., Xu,J., Lei,Y., Jin,L., Zhong,P., Han,R. and Su,B.
TITLE New Emerging Recombinant HIV-1 Strains and Close Transmission
Linkage of HIV-1 Strains in the Chinese MSM Population Indicate a
New Epidemic Risk
JOURNAL PLoS ONE 8 (1), E54322 (2013)
PUBMED 23372706
REFERENCE 2 (bases 1 to 692)
Show all sequences for reference 2
AUTHORS Wu,J., Meng,Z., Xu,J., Lei,Y., Jin,L., Zhong,P., Han,R., Hna,R. and
Su,B.
TITLE Direct Submission
JOURNAL Submitted (19-NOV-2012) Anhui Provincial Center for Disease Control
and Prevention, Hefei, Anhui 230032, China
COMMENT ##Assembly-Data-START## Assembly Method Seuqncher v. 5 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..692
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2011.ANHUI.HNg8"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="China"
/collection_date="2011"
/note="genotype: CRF01_AE"
gene <1..>692
/gene="gag"
CDS <1..>692
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AGF35381.1"
/db_xref="GI:451317259"
/translation="SVLSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFALNPG
LLESAEGCQQIIEQLQPXXKTGSEELKSLYNTVVTLWCVHQRIXIKDTKEALDKMEEX
QTKSQQKTQQXAAGXGSSSKVSQNYPIVQNAQGQMVHQPITPRTLNAWVKVVEEKGFN
PEVIPMFAALSEGATPQDLNMMLNIVGGHQAAMQMLKETINEEAADWDRTHPAQAGPF
PPGQIREPRGSD"
BASE COUNT 268 a 125 c 163 g 126 t 10 other
ORIGIN
1 gtcagtatta agtgggggaa aattagattc atgggaaaaa attcggttac ggccaggggg
61 aaagaaaaaa tatagactaa aacatttagt atgggcaagc agggagytgg aaagattcgc
121 acttaaccct ggcctgttag aatcagcrga aggatgtcaa caaataatag aacagttaca
181 gccarctytc aagacaggat cagaagaact taagtcatta tacaatacag tagtaaccct
241 ttggtgtgta caccaaagga tagamataaa agacaccaag gaagctttag ataaaatgga
301 ggaagyacaa actaagagcc agcaaaagac acagcagrca gcagctggcr caggaagcag
361 tagcaaagtc agccaaaatt accctatagt gcaaaatgca caagggcaaa tggtacatca
421 gcctataaca cctagaactt taaatgcatg ggtaaaagta gtagaagaaa agggttttaa
481 tccagaagta atacccatgt tcgcagcatt atcagargga gccaccccac aagatttaaa
541 tatgatgcta aatatagtgg ggggacacca ggcagcaatg caaatgttaa aagaaaccat
601 caatgaagaa gctgcagatt gggatagrac acacccagca caggcagggc cttttccacc
661 aggccagata agggaaccaa ggggaagtga ca
//
last modified: Tue May 31 10:56 2022