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LOCUS KC203137 681 bp RNA linear VRL 19-FEB-2013
DEFINITION HIV-1 isolate 2011.ANHUI.HNg5 from China gag protein (gag) gene,
partial cds
ACCESSION KC203137
VERSION KC203137.1 GI:451317254
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 681)
Show all sequences for reference 1
AUTHORS Wu,J., Meng,Z., Xu,J., Lei,Y., Jin,L., Zhong,P., Han,R. and Su,B.
TITLE New Emerging Recombinant HIV-1 Strains and Close Transmission
Linkage of HIV-1 Strains in the Chinese MSM Population Indicate a
New Epidemic Risk
JOURNAL PLoS ONE 8 (1), E54322 (2013)
PUBMED 23372706
REFERENCE 2 (bases 1 to 681)
Show all sequences for reference 2
AUTHORS Wu,J., Meng,Z., Xu,J., Lei,Y., Jin,L., Zhong,P., Han,R., Hna,R. and
Su,B.
TITLE Direct Submission
JOURNAL Submitted (19-NOV-2012) Anhui Provincial Center for Disease Control
and Prevention, Hefei, Anhui 230032, China
COMMENT ##Assembly-Data-START## Assembly Method Seuqncher v. 5 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..681
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2011.ANHUI.HNg5"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="China"
/collection_date="2011"
/note="genotype: CRF01_AE"
gene <1..>681
/gene="gag"
CDS <1..>681
/gene="gag"
/codon_start="3"
/transl_table="1"
/product="gag protein"
/protein_id="AGF35379.1"
/db_xref="GI:451317255"
/translation="SGGKLDXWEKIRLRPGGKKKYRXKHLVWASRELERFALNPGLLE
SAEGCQQIIEQLQSXLKTGSEELKSLFNTVATLWCVHQRIDXKDTKEALDKIEEVQXK
SQQKTQQASAATGSSSKVSLNYPIVQNAQGQMVHQAVSPRTLNAWVKVVEEKGFNPEV
IPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKETINEEAADWDRTHPVQAGPIPPG
QIREPRGS"
BASE COUNT 263 a 118 c 162 g 129 t 9 other
ORIGIN
1 taagtggggg aaaattagat rcatgggaaa aaattcggtt acggccaggg ggaaagaaaa
61 aatataggmt gaaacattta gtatgggcaa gcagggagtt agaaagattc gcacttaacc
121 ctggcctgtt agaatcagca gaaggatgtc arcaaataat agaacagtta caatcaamtc
181 ttaagacagg atcagaagaa cttaaatcat tatttaatac agtagcaacc ctttggtgtg
241 tacaycaaag gatagatrta aaagacacca aggaagcttt agataaaata gaggaagtac
301 aaaakaagag ccagcaaaag acacagcagg catcagctgc cacaggaagc agcagcaagg
361 tcagcctaaa ttaccctata gtgcaaaatg cacaagggca aatggtacat caggctgtat
421 cacctagrac tttaaatgca tgggtaaaag tagtagaaga aaagggtttt aacccagaag
481 taatacccat gttctcagca ttatcagagg gagccacccc acaagattta aatatgatgc
541 taaatatagt ggggggacay caggcagcaa tgcaaatgtt aaaagaaacc atcaatgaag
601 aagctgcaga ttgggatagg acacacccag tacaggcagg gcctattcca ccaggccaga
661 taagggaacc aaggggaagt g
//
last modified: Tue May 31 10:56 2022