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LOCUS JX983018 1770 bp DNA linear VRL 13-FEB-2013
DEFINITION HIV-1 isolate HJ3059 from Cameroon pol protein (pol) gene, partial
cds
ACCESSION JX983018
VERSION JX983018.1 GI:449041057
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1770)
Show all sequences for reference 1
AUTHORS Aghokeng,A.F., Kouanfack,C., Eymard-Duvernay,S., Butel,C.,
Edoul,G.E., Laurent,C., Koulla-Shiro,S., Delaporte,E.,
Mpoudi-Ngole,E. and Peeters,M.
TITLE Virological outcome and patterns of HIV-1 drug resistance in
patients with 36 months' antiretroviral therapy experience in
Cameroon
JOURNAL J Int AIDS Soc 16, 18004 (2013)
PUBMED 23374858
REFERENCE 2 (bases 1 to 1770)
Show all sequences for reference 2
AUTHORS Aghokeng,A.F., Kouanfack,C., Eymard-Duvernay,S., Butel,C.,
Edoul,G.E., Laurent,C., Koulla-Shiro,S., Delaporte,E.,
Mpoudi-Ngole,E. and Peeters,M.
TITLE Direct Submission
JOURNAL Submitted (18-OCT-2012) HIV-AIDS, Virology Laboratory
CREMER-IMPM-IRD, Rue Elig-Essono, Yaounde 1857, Cameroon
COMMENT ##Assembly-Data-START## Assembly Method SeqMan v. 8.0.2 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1770
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="HJ3059"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cameroon"
/collection_date="2008"
gene <1..>1770
/gene="pol"
CDS <1..>1770
/gene="pol"
/note="contains complete protease and partial reverse
transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGE82034.1"
/db_xref="GI:449041058"
/translation="FFRENLAFQQGKARKFSSEQTRTNSPTSRELRDGGRDNLHSEAG
TEGQRGTEGQGNISSLNLPQITLWQRPLVTVRIEGQLIEALLDTGADDTVLEEINLPG
KWKPKMIGGIGGFIKVRQYDQILIEICGKRAXGTVLVGPTPVNIIGRNMLTQIGCTLN
FPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYN
TPVFAIKKKDSNRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTILDVGDAY
FSVPLDENFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRT
ENPEIVIYQYVDDLYVGSDLEIGQHREKIQELREHLLKWGFFTPDQKHQKEPPFRWLG
YELHPDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLIRGAKTL
TEVVTLTEEAELELAENREILKEPVHGVYYDPAKDLXAEIQKQGQDQWTYQIYQEPFK
NLKTGKYAKKRSAHTNDVKQLTEVVQKVALEGIVIWGKTPKFRLPIQKETWEAWWMEY
WQATWIPEWEFVNTPPLVKLWYQL"
BASE COUNT 682 a 299 c 385 g 397 t 7 other
ORIGIN
1 ttttttaggg aaaatttggc cttccagcaa gggaaggcca ggaaattttc ctcagagcag
61 accagaacca acagccccac cagcagagag cttcgggatg ggggaagaga caacctccac
121 tctgaagcag gaaccgaggg acaaagagga accgagggac aagggaatat atcctccctt
181 aacctccctc aaatcactct ttggcarcga cccttagtca cagtaagaat agagggacar
241 ctaatagaag ccctattaga cacaggagca gatgatacag tattagaaga aataaattta
301 ccagggaaat ggaaaccaaa aatgataggg ggaattggag gttttatcaa agtaagacaa
361 tatgatcaga tacttataga aatttgtggr aaaagggctr taggtacagt gttagtagga
421 cctacacctg tcaacataat tggacgaaat atgttgactc agattggttg tactttaaat
481 tttccaatta gtcctattga aactgtacca gtaaaattga agccaggaat ggatggtcca
541 aaggttaaac aatggccatt gacagaagaa aaaataaagg cgytaacaga aatttgtaca
601 gaaatggaaa aggaaggaaa aatttcaaaa attggacctg aaaatccata taatactcca
661 gtatttgcca taaagaaaaa agatagtaat agatggagaa aattagtaga ttttagagaa
721 ctcaataaaa gaactcaaga cttctgggag gtccaactag gaatacctca tcccgcggga
781 ctaaaaaaga ataaatcagt aacaatacta gatgtggggg atgcatattt ttcagttccc
841 ttggatgaaa actttagaaa gtatactgca ttcactatac ctagtgtaaa taatgaaaca
901 ccggggatta gatatcagta caatgtgctt ccacagggat ggaaaggatc accagcaata
961 tttcaggcta gcatgacaaa aatcttagag ccctttagaa cagaaaatcc agagatagtg
1021 atttaccaat atgtggatga tttatatgta gggtctgact tagaaatagg gcagcacaga
1081 gaaaaaatcc aggagttaag agaacatcta ctgaaatggg gatttttcac accagaccaa
1141 aaacatcaga aagaacctcc atttcgttgg ctgggatatg aactccatcc tgacaaatgg
1201 acagttcagc ctataacgct gccagaaaaa gatagctgga ctgtcaatga tatacagaaa
1261 ttagtgggaa aactaaattg ggcaagtcag atttatccag gaattaaagt aaagcaactg
1321 tgtagactca tcaggggagc caaaacacta acagaggtag tgacactgac tgaggaagca
1381 gaattagaat tggcagaaaa tagagaaatt ctaaaagaac ctgtacatgg agtatattat
1441 gatccagcaa aagacctart agcagaaata cagaaacaag ggcaagacca atggacatat
1501 caaatttatc aagagccatt taaaaattta aaaacaggra aatatgcaaa aaagaggtct
1561 gcccacacta atgatgtaaa acaattaaca gaggtagtgc aaaaggtggc tctagaaggc
1621 atagtaatat ggggaaagac ccctaaattt agactaccca tacaaaagga aacatgggaa
1681 gcatggtgga tggagtattg gcaggctacc tggattcctg aatgggaatt tgtcaatacc
1741 cctcctctag taaaattatg gtaccaatta
//
last modified: Tue May 31 10:56 2022