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LOCUS	    JX983018		    1770 bp    DNA     linear	VRL 13-FEB-2013
DEFINITION  HIV-1 isolate HJ3059 from Cameroon pol protein (pol) gene, partial
	    cds
ACCESSION   JX983018
VERSION     JX983018.1 GI:449041057
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1770)
            Show all sequences for reference 1
  AUTHORS   Aghokeng,A.F., Kouanfack,C., Eymard-Duvernay,S., Butel,C.,
	    Edoul,G.E., Laurent,C., Koulla-Shiro,S., Delaporte,E.,
	    Mpoudi-Ngole,E. and Peeters,M.
  TITLE     Virological outcome and patterns of HIV-1 drug resistance in
	    patients with 36 months' antiretroviral therapy experience in
	    Cameroon
  JOURNAL   J Int AIDS Soc 16, 18004 (2013)
  PUBMED    23374858
REFERENCE   2 (bases 1 to 1770)
            Show all sequences for reference 2
  AUTHORS   Aghokeng,A.F., Kouanfack,C., Eymard-Duvernay,S., Butel,C.,
	    Edoul,G.E., Laurent,C., Koulla-Shiro,S., Delaporte,E.,
	    Mpoudi-Ngole,E. and Peeters,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2012) HIV-AIDS, Virology Laboratory
	    CREMER-IMPM-IRD, Rue Elig-Essono, Yaounde 1857, Cameroon
COMMENT     ##Assembly-Data-START## Assembly Method SeqMan v. 8.0.2 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1770
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="HJ3059"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cameroon"
		     /collection_date="2008"
     gene	     <1..>1770
		     /gene="pol"
     CDS	     <1..>1770
		     /gene="pol"
		     /note="contains complete protease and partial reverse
		     transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGE82034.1"
		     /db_xref="GI:449041058"
		     /translation="FFRENLAFQQGKARKFSSEQTRTNSPTSRELRDGGRDNLHSEAG
		     TEGQRGTEGQGNISSLNLPQITLWQRPLVTVRIEGQLIEALLDTGADDTVLEEINLPG
		     KWKPKMIGGIGGFIKVRQYDQILIEICGKRAXGTVLVGPTPVNIIGRNMLTQIGCTLN
		     FPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYN
		     TPVFAIKKKDSNRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTILDVGDAY
		     FSVPLDENFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRT
		     ENPEIVIYQYVDDLYVGSDLEIGQHREKIQELREHLLKWGFFTPDQKHQKEPPFRWLG
		     YELHPDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLIRGAKTL
		     TEVVTLTEEAELELAENREILKEPVHGVYYDPAKDLXAEIQKQGQDQWTYQIYQEPFK
		     NLKTGKYAKKRSAHTNDVKQLTEVVQKVALEGIVIWGKTPKFRLPIQKETWEAWWMEY
		     WQATWIPEWEFVNTPPLVKLWYQL"
BASE COUNT	682 a	 299 c	  385 g    397 t      7 other
ORIGIN
       1 ttttttaggg aaaatttggc cttccagcaa gggaaggcca ggaaattttc ctcagagcag 
      61 accagaacca acagccccac cagcagagag cttcgggatg ggggaagaga caacctccac 
     121 tctgaagcag gaaccgaggg acaaagagga accgagggac aagggaatat atcctccctt 
     181 aacctccctc aaatcactct ttggcarcga cccttagtca cagtaagaat agagggacar 
     241 ctaatagaag ccctattaga cacaggagca gatgatacag tattagaaga aataaattta 
     301 ccagggaaat ggaaaccaaa aatgataggg ggaattggag gttttatcaa agtaagacaa 
     361 tatgatcaga tacttataga aatttgtggr aaaagggctr taggtacagt gttagtagga 
     421 cctacacctg tcaacataat tggacgaaat atgttgactc agattggttg tactttaaat 
     481 tttccaatta gtcctattga aactgtacca gtaaaattga agccaggaat ggatggtcca 
     541 aaggttaaac aatggccatt gacagaagaa aaaataaagg cgytaacaga aatttgtaca 
     601 gaaatggaaa aggaaggaaa aatttcaaaa attggacctg aaaatccata taatactcca 
     661 gtatttgcca taaagaaaaa agatagtaat agatggagaa aattagtaga ttttagagaa 
     721 ctcaataaaa gaactcaaga cttctgggag gtccaactag gaatacctca tcccgcggga 
     781 ctaaaaaaga ataaatcagt aacaatacta gatgtggggg atgcatattt ttcagttccc 
     841 ttggatgaaa actttagaaa gtatactgca ttcactatac ctagtgtaaa taatgaaaca 
     901 ccggggatta gatatcagta caatgtgctt ccacagggat ggaaaggatc accagcaata 
     961 tttcaggcta gcatgacaaa aatcttagag ccctttagaa cagaaaatcc agagatagtg 
    1021 atttaccaat atgtggatga tttatatgta gggtctgact tagaaatagg gcagcacaga 
    1081 gaaaaaatcc aggagttaag agaacatcta ctgaaatggg gatttttcac accagaccaa 
    1141 aaacatcaga aagaacctcc atttcgttgg ctgggatatg aactccatcc tgacaaatgg 
    1201 acagttcagc ctataacgct gccagaaaaa gatagctgga ctgtcaatga tatacagaaa 
    1261 ttagtgggaa aactaaattg ggcaagtcag atttatccag gaattaaagt aaagcaactg 
    1321 tgtagactca tcaggggagc caaaacacta acagaggtag tgacactgac tgaggaagca 
    1381 gaattagaat tggcagaaaa tagagaaatt ctaaaagaac ctgtacatgg agtatattat 
    1441 gatccagcaa aagacctart agcagaaata cagaaacaag ggcaagacca atggacatat 
    1501 caaatttatc aagagccatt taaaaattta aaaacaggra aatatgcaaa aaagaggtct 
    1561 gcccacacta atgatgtaaa acaattaaca gaggtagtgc aaaaggtggc tctagaaggc 
    1621 atagtaatat ggggaaagac ccctaaattt agactaccca tacaaaagga aacatgggaa 
    1681 gcatggtgga tggagtattg gcaggctacc tggattcctg aatgggaatt tgtcaatacc 
    1741 cctcctctag taaaattatg gtaccaatta 
//
last modified: Tue May 31 10:56 2022


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