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LOCUS	    JX983013		    1752 bp    DNA     linear	VRL 13-FEB-2013
DEFINITION  HIV-1 isolate HJ3234 from Cameroon pol protein (pol) gene, partial
	    cds
ACCESSION   JX983013
VERSION     JX983013.1 GI:449041047
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1752)
            Show all sequences for reference 1
  AUTHORS   Aghokeng,A.F., Kouanfack,C., Eymard-Duvernay,S., Butel,C.,
	    Edoul,G.E., Laurent,C., Koulla-Shiro,S., Delaporte,E.,
	    Mpoudi-Ngole,E. and Peeters,M.
  TITLE     Virological outcome and patterns of HIV-1 drug resistance in
	    patients with 36 months' antiretroviral therapy experience in
	    Cameroon
  JOURNAL   J Int AIDS Soc 16, 18004 (2013)
  PUBMED    23374858
REFERENCE   2 (bases 1 to 1752)
            Show all sequences for reference 2
  AUTHORS   Aghokeng,A.F., Kouanfack,C., Eymard-Duvernay,S., Butel,C.,
	    Edoul,G.E., Laurent,C., Koulla-Shiro,S., Delaporte,E.,
	    Mpoudi-Ngole,E. and Peeters,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2012) HIV-AIDS, Virology Laboratory
	    CREMER-IMPM-IRD, Rue Elig-Essono, Yaounde 1857, Cameroon
COMMENT     ##Assembly-Data-START## Assembly Method SeqMan v. 8.0.2 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1752
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="HJ3234"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cameroon"
		     /collection_date="2009"
     gene	     <1..>1752
		     /gene="pol"
     CDS	     <1..>1752
		     /gene="pol"
		     /note="contains complete protease and partial reverse
		     transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGE82029.1"
		     /db_xref="GI:449041048"
		     /translation="FFRENLAFQQREARKFSPEQTRTNSPTSRTLWDGGRDTLPSEAG
		     TEGQGTIPSFNFPQITLWQRPLVTVRIGGQLIEALLDTGADDTVLEDINLPGKWKPKM
		     IGGIGGFIKVRQYDQILMEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPI
		     ETVPVTLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNXPVFVI
		     KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
		     EGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRIKNPEIV
		     IYQYVDDLNVGSDLEIGQHRAKVEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPD
		     KWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIVTL
		     TEEAELELAENREILKEPVHGVYYDPAKDLIAEIQKQGQDQWTYQIYQEPFKNLKTGK
		     YAKRRSAHTNDVKQLVETVQKVATEXIIIWGKTPKFRLPIQKETWETWWLEYWQATWI
		     PEWEFVNTSPLVKLWYQL"
BASE COUNT	671 a	 308 c	  381 g    390 t      2 other
ORIGIN
       1 ttttttaggg aaaatttggc cttccagcaa agggaggcca ggaaattttc cccagagcag 
      61 accagaacca acagccccac cagcagaact ctttgggatg ggggaagaga caccctcccc 
     121 tccgaagcag gaacagaagg acaaggaact ataccctcct ttaacttccc tcaaatcact 
     181 ctttggcaac gacccttagt tacagtaaga atagggggac agctaataga agccctatta 
     241 gacacaggag cagatgatac agtattagaa gatataaatt taccaggaaa atggaaacca 
     301 aaaatgatag ggggaattgg aggttttatc aaagtaagac aatatgatca gatacttatg 
     361 gaaatttgtg ggaaaaaggc tataggtaca gtgttagtag gacctacacc tgtcaacata 
     421 attggacgaa acatgttgac tcagattggt tgtactttaa attttccaat tagtcctatt 
     481 gaaactgtac cagtaacatt aaagccagga atggatggcc caaaggttaa acaatggcca 
     541 ttgacagaag aaaaaataaa ggcattaaca gaaatttgta cagagatgga aaaggaagga 
     601 aaaatttcaa aaattgggcc tgaaaatcca tacaatwcgc cagtatttgt tataaagaaa 
     661 aaagacagta ctaaatggag aaaactagta gatttcagag aactcaataa aagaactcaa 
     721 gacttctggg aggtccaact agggatacct catcccgcgg gattaaaaaa gaaaaaatca 
     781 gtaacagtgc tagatgtggg ggatgcatat ttttcagttc ccttagatga aggctttaga 
     841 aagtatactg ccttcacgat acctagtata aataatgaga caccggggat tagatatcag 
     901 tacaatgtgc ttccacaggg atggaaagga tcaccagcaa tatttcaggc tagcatgaca 
     961 aaaatcttag agccctttag aataaagaac ccagaaatag taatttacca atatgtggat 
    1021 gatttaaatg taggatctga cttagagata gggcagcata gagcaaaagt agaggagtta 
    1081 agagaacatc tactgagatg gggatttacc acaccagaca aaaagcatca gaaagaacct 
    1141 ccatttcttt ggatgggata tgaactccat cctgacaaat ggacagtcca gcctatacag 
    1201 ttgccagaaa aagacagctg gactgtcaat gatatacaga aattagtggg aaaactaaat 
    1261 tgggcaagcc agatttatcc aggaattaaa gtaagacaac tgtgtaaact cctcagggga 
    1321 gccaaagcac tgacagatat agtaacacta actgaggaag cagaattaga attggcagag 
    1381 aacagggaaa ttctaaaaga acctgtacat ggagtctatt atgacccagc aaaagacctg 
    1441 atagcagaaa tacagaaaca agggcaagac caatggacat atcaaattta tcaagagcca 
    1501 tttaaaaatc taaaaacagg aaaatatgca aaaaggaggt ctgctcacac taatgatgta 
    1561 aaacaattag tagagacagt gcaaaaggtg gctacagaaa rcataataat atggggaaag 
    1621 acccctaaat ttagattacc catacaaaag gaaacatggg aaacctggtg gctggagtat 
    1681 tggcaggcta cctggattcc tgaatgggag tttgtcaaca cctcacctct agtaaaatta 
    1741 tggtaccagt ta
//
last modified: Tue May 31 10:56 2022


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