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LOCUS JX983013 1752 bp DNA linear VRL 13-FEB-2013
DEFINITION HIV-1 isolate HJ3234 from Cameroon pol protein (pol) gene, partial
cds
ACCESSION JX983013
VERSION JX983013.1 GI:449041047
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1752)
Show all sequences for reference 1
AUTHORS Aghokeng,A.F., Kouanfack,C., Eymard-Duvernay,S., Butel,C.,
Edoul,G.E., Laurent,C., Koulla-Shiro,S., Delaporte,E.,
Mpoudi-Ngole,E. and Peeters,M.
TITLE Virological outcome and patterns of HIV-1 drug resistance in
patients with 36 months' antiretroviral therapy experience in
Cameroon
JOURNAL J Int AIDS Soc 16, 18004 (2013)
PUBMED 23374858
REFERENCE 2 (bases 1 to 1752)
Show all sequences for reference 2
AUTHORS Aghokeng,A.F., Kouanfack,C., Eymard-Duvernay,S., Butel,C.,
Edoul,G.E., Laurent,C., Koulla-Shiro,S., Delaporte,E.,
Mpoudi-Ngole,E. and Peeters,M.
TITLE Direct Submission
JOURNAL Submitted (18-OCT-2012) HIV-AIDS, Virology Laboratory
CREMER-IMPM-IRD, Rue Elig-Essono, Yaounde 1857, Cameroon
COMMENT ##Assembly-Data-START## Assembly Method SeqMan v. 8.0.2 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1752
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="HJ3234"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cameroon"
/collection_date="2009"
gene <1..>1752
/gene="pol"
CDS <1..>1752
/gene="pol"
/note="contains complete protease and partial reverse
transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGE82029.1"
/db_xref="GI:449041048"
/translation="FFRENLAFQQREARKFSPEQTRTNSPTSRTLWDGGRDTLPSEAG
TEGQGTIPSFNFPQITLWQRPLVTVRIGGQLIEALLDTGADDTVLEDINLPGKWKPKM
IGGIGGFIKVRQYDQILMEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPI
ETVPVTLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNXPVFVI
KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
EGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRIKNPEIV
IYQYVDDLNVGSDLEIGQHRAKVEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPD
KWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIVTL
TEEAELELAENREILKEPVHGVYYDPAKDLIAEIQKQGQDQWTYQIYQEPFKNLKTGK
YAKRRSAHTNDVKQLVETVQKVATEXIIIWGKTPKFRLPIQKETWETWWLEYWQATWI
PEWEFVNTSPLVKLWYQL"
BASE COUNT 671 a 308 c 381 g 390 t 2 other
ORIGIN
1 ttttttaggg aaaatttggc cttccagcaa agggaggcca ggaaattttc cccagagcag
61 accagaacca acagccccac cagcagaact ctttgggatg ggggaagaga caccctcccc
121 tccgaagcag gaacagaagg acaaggaact ataccctcct ttaacttccc tcaaatcact
181 ctttggcaac gacccttagt tacagtaaga atagggggac agctaataga agccctatta
241 gacacaggag cagatgatac agtattagaa gatataaatt taccaggaaa atggaaacca
301 aaaatgatag ggggaattgg aggttttatc aaagtaagac aatatgatca gatacttatg
361 gaaatttgtg ggaaaaaggc tataggtaca gtgttagtag gacctacacc tgtcaacata
421 attggacgaa acatgttgac tcagattggt tgtactttaa attttccaat tagtcctatt
481 gaaactgtac cagtaacatt aaagccagga atggatggcc caaaggttaa acaatggcca
541 ttgacagaag aaaaaataaa ggcattaaca gaaatttgta cagagatgga aaaggaagga
601 aaaatttcaa aaattgggcc tgaaaatcca tacaatwcgc cagtatttgt tataaagaaa
661 aaagacagta ctaaatggag aaaactagta gatttcagag aactcaataa aagaactcaa
721 gacttctggg aggtccaact agggatacct catcccgcgg gattaaaaaa gaaaaaatca
781 gtaacagtgc tagatgtggg ggatgcatat ttttcagttc ccttagatga aggctttaga
841 aagtatactg ccttcacgat acctagtata aataatgaga caccggggat tagatatcag
901 tacaatgtgc ttccacaggg atggaaagga tcaccagcaa tatttcaggc tagcatgaca
961 aaaatcttag agccctttag aataaagaac ccagaaatag taatttacca atatgtggat
1021 gatttaaatg taggatctga cttagagata gggcagcata gagcaaaagt agaggagtta
1081 agagaacatc tactgagatg gggatttacc acaccagaca aaaagcatca gaaagaacct
1141 ccatttcttt ggatgggata tgaactccat cctgacaaat ggacagtcca gcctatacag
1201 ttgccagaaa aagacagctg gactgtcaat gatatacaga aattagtggg aaaactaaat
1261 tgggcaagcc agatttatcc aggaattaaa gtaagacaac tgtgtaaact cctcagggga
1321 gccaaagcac tgacagatat agtaacacta actgaggaag cagaattaga attggcagag
1381 aacagggaaa ttctaaaaga acctgtacat ggagtctatt atgacccagc aaaagacctg
1441 atagcagaaa tacagaaaca agggcaagac caatggacat atcaaattta tcaagagcca
1501 tttaaaaatc taaaaacagg aaaatatgca aaaaggaggt ctgctcacac taatgatgta
1561 aaacaattag tagagacagt gcaaaaggtg gctacagaaa rcataataat atggggaaag
1621 acccctaaat ttagattacc catacaaaag gaaacatggg aaacctggtg gctggagtat
1681 tggcaggcta cctggattcc tgaatgggag tttgtcaaca cctcacctct agtaaaatta
1741 tggtaccagt ta
//
last modified: Tue May 31 10:56 2022