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LOCUS	    JX983011		    1752 bp    DNA     linear	VRL 13-FEB-2013
DEFINITION  HIV-1 isolate HJ3275 from Cameroon pol protein (pol) gene, partial
	    cds
ACCESSION   JX983011
VERSION     JX983011.1 GI:449041043
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1752)
            Show all sequences for reference 1
  AUTHORS   Aghokeng,A.F., Kouanfack,C., Eymard-Duvernay,S., Butel,C.,
	    Edoul,G.E., Laurent,C., Koulla-Shiro,S., Delaporte,E.,
	    Mpoudi-Ngole,E. and Peeters,M.
  TITLE     Virological outcome and patterns of HIV-1 drug resistance in
	    patients with 36 months' antiretroviral therapy experience in
	    Cameroon
  JOURNAL   J Int AIDS Soc 16, 18004 (2013)
  PUBMED    23374858
REFERENCE   2 (bases 1 to 1752)
            Show all sequences for reference 2
  AUTHORS   Aghokeng,A.F., Kouanfack,C., Eymard-Duvernay,S., Butel,C.,
	    Edoul,G.E., Laurent,C., Koulla-Shiro,S., Delaporte,E.,
	    Mpoudi-Ngole,E. and Peeters,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2012) HIV-AIDS, Virology Laboratory
	    CREMER-IMPM-IRD, Rue Elig-Essono, Yaounde 1857, Cameroon
COMMENT     ##Assembly-Data-START## Assembly Method SeqMan v. 8.0.2 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1752
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="HJ3275"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cameroon"
		     /collection_date="2009"
     gene	     <1..>1752
		     /gene="pol"
     CDS	     <1..>1752
		     /gene="pol"
		     /note="contains complete protease and partial reverse
		     transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGE82027.1"
		     /db_xref="GI:449041044"
		     /translation="FFRENLAFQQGEARKFSSEQTRTNSPTSRVLRDGGRDTLPSEAG
		     SEXQGTISSFGFPQITLWQRPLVTVKIGGQLIEALLDTGADDTVLAEMSLPGKWKPKM
		     IGGIGGFIKVRQYDQILIEICGKKAIGTVLIGPTPVNIIGRNMLTQIGCTLNFPISPI
		     ETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICAEMEKEGKISKIGPENPYNTPVFAI
		     KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
		     ESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRINNPEIV
		     IYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPD
		     KWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDVVTL
		     TEEAELELAENREILKEPVHGVYYDPAKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGK
		     YAKKRTAHTNDVRQLTEVVQKVATESIVIWGKTPKFRLPIQKETWETWWLEYWQATWI
		     PEWEFVNTPPLVKLWYQL"
BASE COUNT	666 a	 298 c	  373 g    391 t     24 other
ORIGIN
       1 ttttttaggg agaatttggc cttccagcaa ggggaggcca ggaaattttc ctcagagcag 
      61 accagaacca acagccccac cagcagagtg cttcgggatg ggggaagaga taccctcccc 
     121 tccgaagcag gaagcgaarg acaagggact atatcctcct ttggattccc tcaaatcact 
     181 ctttggcaac gacccttagt yacagtraaa atagggggac arctaataga agcyctatta 
     241 gacacaggag cagatgatac agtattagca gaaatgagtt taccaggraa atggaaacca 
     301 aaaatgatag ggggaattgg aggttttatc aaagtaagac aatatgatca gatactyata 
     361 gaaatttgtg graaaaaggc tataggtaca gtgttaatag grcctacacc tgtcaacata 
     421 attggacgaa atatgttgac tcagattggt tgtactttaa attttccaat tagtcctatt 
     481 gaaactgtac cagtaaaatt aaagccagga atggatggcc caaaggttaa acaatggcca 
     541 ttgacagaag aaaaaataaa ggcattaaca gatatttgtg cagaaatgga aaaggaagga 
     601 aaaatttcaa aaattgggcc tgaaaatcca tacaatactc cagtatttgc cataaagaaa 
     661 aaagatagya ctaaatggag aaaactagta gattttagag aactcaataa aagaactcaa 
     721 gacttctggg aggtccaact agggatacct catcccgcgg gattaaaaaa gaaaaaatca 
     781 gtaacagtac tagatgtggg ggatgcatat ttttcagttc ccttagatga aagctttaga 
     841 aagtayactg catttactat acctagtata aataatgaga caccagggat tagatatcag 
     901 tacaatgtrc ttccacaagg atggaaagga tcaccagcaa tatttcaggc tagcatgaca 
     961 aaaatcttag agccctttag aataaacaat ccagagatag taatttacca atayatggat 
    1021 gatctatatg taggatctga cctagagata gggcarcata gagcaaaaat agaggagtta 
    1081 agagaacatc trctgaaatg ggggtttacc acaccagaca aaaarcatca gaaagaacct 
    1141 ccatttcttt ggatgggata tgaactccat cctgayaaat ggacagttca gcctatacag 
    1201 ctaccagaaa aggacagctg gactgtcaat gatatacaga aattagtggg aaaactaaat 
    1261 tgggcaagtc aratttatgc aggaattaaa gtaaggcaac tatgtaaact cctcagggga 
    1321 gccaaagcac tgacagatgt agtaacactg actgaggaag cagaattaga attggcagag 
    1381 aacagggaaa ttctaaaaga acctgtacat ggagtctatt atgacccagc aaaagaccta 
    1441 gtagcagaaa tacagaagca aggacaagac cartggacat atcaaattta tcaagagcca 
    1501 tttaaaaatt taaaaacagg aaaatatgca aaaaagagga ctgcwcacac taatgatgta 
    1561 agacaattaa cagaggtagt gcaaaaagtm gctacagaaa gcatagtaat atggggaaag 
    1621 acccctaaat ttagactacc catacaaaar gaaacatggg aaacatggtg gctggagtat 
    1681 tggcargcta cctggattcc tgaatgggag tttgtcaata cccctcctct agtaaaattr 
    1741 tggtaccaat ta
//
last modified: Tue May 31 10:56 2022


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