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LOCUS JX983011 1752 bp DNA linear VRL 13-FEB-2013
DEFINITION HIV-1 isolate HJ3275 from Cameroon pol protein (pol) gene, partial
cds
ACCESSION JX983011
VERSION JX983011.1 GI:449041043
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1752)
Show all sequences for reference 1
AUTHORS Aghokeng,A.F., Kouanfack,C., Eymard-Duvernay,S., Butel,C.,
Edoul,G.E., Laurent,C., Koulla-Shiro,S., Delaporte,E.,
Mpoudi-Ngole,E. and Peeters,M.
TITLE Virological outcome and patterns of HIV-1 drug resistance in
patients with 36 months' antiretroviral therapy experience in
Cameroon
JOURNAL J Int AIDS Soc 16, 18004 (2013)
PUBMED 23374858
REFERENCE 2 (bases 1 to 1752)
Show all sequences for reference 2
AUTHORS Aghokeng,A.F., Kouanfack,C., Eymard-Duvernay,S., Butel,C.,
Edoul,G.E., Laurent,C., Koulla-Shiro,S., Delaporte,E.,
Mpoudi-Ngole,E. and Peeters,M.
TITLE Direct Submission
JOURNAL Submitted (18-OCT-2012) HIV-AIDS, Virology Laboratory
CREMER-IMPM-IRD, Rue Elig-Essono, Yaounde 1857, Cameroon
COMMENT ##Assembly-Data-START## Assembly Method SeqMan v. 8.0.2 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1752
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="HJ3275"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cameroon"
/collection_date="2009"
gene <1..>1752
/gene="pol"
CDS <1..>1752
/gene="pol"
/note="contains complete protease and partial reverse
transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGE82027.1"
/db_xref="GI:449041044"
/translation="FFRENLAFQQGEARKFSSEQTRTNSPTSRVLRDGGRDTLPSEAG
SEXQGTISSFGFPQITLWQRPLVTVKIGGQLIEALLDTGADDTVLAEMSLPGKWKPKM
IGGIGGFIKVRQYDQILIEICGKKAIGTVLIGPTPVNIIGRNMLTQIGCTLNFPISPI
ETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICAEMEKEGKISKIGPENPYNTPVFAI
KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
ESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRINNPEIV
IYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPD
KWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDVVTL
TEEAELELAENREILKEPVHGVYYDPAKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGK
YAKKRTAHTNDVRQLTEVVQKVATESIVIWGKTPKFRLPIQKETWETWWLEYWQATWI
PEWEFVNTPPLVKLWYQL"
BASE COUNT 666 a 298 c 373 g 391 t 24 other
ORIGIN
1 ttttttaggg agaatttggc cttccagcaa ggggaggcca ggaaattttc ctcagagcag
61 accagaacca acagccccac cagcagagtg cttcgggatg ggggaagaga taccctcccc
121 tccgaagcag gaagcgaarg acaagggact atatcctcct ttggattccc tcaaatcact
181 ctttggcaac gacccttagt yacagtraaa atagggggac arctaataga agcyctatta
241 gacacaggag cagatgatac agtattagca gaaatgagtt taccaggraa atggaaacca
301 aaaatgatag ggggaattgg aggttttatc aaagtaagac aatatgatca gatactyata
361 gaaatttgtg graaaaaggc tataggtaca gtgttaatag grcctacacc tgtcaacata
421 attggacgaa atatgttgac tcagattggt tgtactttaa attttccaat tagtcctatt
481 gaaactgtac cagtaaaatt aaagccagga atggatggcc caaaggttaa acaatggcca
541 ttgacagaag aaaaaataaa ggcattaaca gatatttgtg cagaaatgga aaaggaagga
601 aaaatttcaa aaattgggcc tgaaaatcca tacaatactc cagtatttgc cataaagaaa
661 aaagatagya ctaaatggag aaaactagta gattttagag aactcaataa aagaactcaa
721 gacttctggg aggtccaact agggatacct catcccgcgg gattaaaaaa gaaaaaatca
781 gtaacagtac tagatgtggg ggatgcatat ttttcagttc ccttagatga aagctttaga
841 aagtayactg catttactat acctagtata aataatgaga caccagggat tagatatcag
901 tacaatgtrc ttccacaagg atggaaagga tcaccagcaa tatttcaggc tagcatgaca
961 aaaatcttag agccctttag aataaacaat ccagagatag taatttacca atayatggat
1021 gatctatatg taggatctga cctagagata gggcarcata gagcaaaaat agaggagtta
1081 agagaacatc trctgaaatg ggggtttacc acaccagaca aaaarcatca gaaagaacct
1141 ccatttcttt ggatgggata tgaactccat cctgayaaat ggacagttca gcctatacag
1201 ctaccagaaa aggacagctg gactgtcaat gatatacaga aattagtggg aaaactaaat
1261 tgggcaagtc aratttatgc aggaattaaa gtaaggcaac tatgtaaact cctcagggga
1321 gccaaagcac tgacagatgt agtaacactg actgaggaag cagaattaga attggcagag
1381 aacagggaaa ttctaaaaga acctgtacat ggagtctatt atgacccagc aaaagaccta
1441 gtagcagaaa tacagaagca aggacaagac cartggacat atcaaattta tcaagagcca
1501 tttaaaaatt taaaaacagg aaaatatgca aaaaagagga ctgcwcacac taatgatgta
1561 agacaattaa cagaggtagt gcaaaaagtm gctacagaaa gcatagtaat atggggaaag
1621 acccctaaat ttagactacc catacaaaar gaaacatggg aaacatggtg gctggagtat
1681 tggcargcta cctggattcc tgaatgggag tttgtcaata cccctcctct agtaaaattr
1741 tggtaccaat ta
//
last modified: Tue May 31 10:56 2022