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LOCUS JX503083 8901 bp RNA linear VRL 19-SEP-2012
DEFINITION UNVERIFIED: HIV-1 isolate HIV-1/USA/BID-G15482 from USA genomic
sequence
ACCESSION JX503083
VERSION JX503083.1 GI:404434699
KEYWORDS UNVERIFIED.
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 8901)
Show all sequences for reference 1
AUTHORS Malboeuf,C.M., Yang,X., Charlebois,P., Qu,J., Berlin,A.M.,
Casali,M., Pesko,K.N., Boutwell,C.L., Devincenzo,J.P., Ebel,G.D.,
Allen,T.M., Zody,M.C., Henn,M.R. and Levin,J.Z.
TITLE Complete viral RNA genome sequencing of ultra-low copy samples by
sequence-independent amplification.
JOURNAL Nucleic Acids Res. 2012 Sep 8.
PUBMED 22962364
REFERENCE 2 (bases 1 to 8901)
Show all sequences for reference 2
AUTHORS Malboeuf,C.M., Yang,X., Charlebois,P., Qu,J., Berlin,A.M.,
Casali,M., Pesko,K.N., Boutwell,C.L., Devincenzo,J.P., Ebel,G.D.,
Allen,T.M., Zody,M.C., Henn,M.R. and Levin,J.Z.
CONSRTM Broad Institute Genome Sequencing Platform; Broad Institute Genome
Sequencing Center for Infectious Disease
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2012) Broad Institute of MIT and Harvard, 320
Charles St., Cambridge, MA 02141, USA
COMMENT GenBank staff is unable to verify sequence and/or annotation
provided by the submitter.; ##Assembly-Data-START## Assembly Method
VICUNA v. 1.0 Sequencing Technology Illumina ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..8901
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="HIV-1/USA/BID-G15482"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
BASE COUNT 3238 a 1559 c 2119 g 1985 t
ORIGIN
1 gaaagagaca gaagcggggg aaaattagat caatgggaaa aaattcggct aaggccaggg
61 ggaaagaaaa aatataaatt aaaacatata gtatgggcaa gcagggagct agaacgattc
121 gcagttaatc ctggcctgtt agaaacatca gaaggctgta aacaaatatt agaacatcta
181 cagccagccc ttcggacagg atcagaagaa cttaaatcat tacataatgc agtagcagtc
241 ctctattgtg tacatcaaag gatagaggta agagacacca aggaagcttt agataagata
301 gaagaagagc aaaacaaaag taagaaaaag gcacagcaag cagcagctga cacaggaaac
361 aacaaccagg tcagccaaaa ttaccctata gtacagaacc tccaagggca aatggtacat
421 caagccatat cacctagaac tttaaatgca tgggtaaaag taatagaaga gaaggctttc
481 agcccagaag tgatacccat gttttcggca ttatcagaag gagccacccc aggtgattta
541 aataccatgc taaacacagt ggggggacat caagcagcca tgcagatgtt aaaagagacc
601 atcaatgagg aagctgcaga atgggataga ttgcatccag tgcaggcagg gcctattgca
661 ccaggccaga taagagaacc aaggggaagt gacatagcag gaactactag tacccttcag
721 gaacaaataa catggatgac aagtaatcca cctattccag taggagatat ctataaaaga
781 tggataatac tgggattaaa taaaatagta aggatgtata gccctactag cattctggac
841 ataagacaag gaccaaaaga accctttaga gactatgtag accggttcta taaaactcta
901 agagccgagc aatgtacaca ggaggtaaaa aattggatga cagaaacctt gttggtccaa
961 aatgcgaatc cagattgtag gactattttg aaagcattgg gaccagcagc tacactagaa
1021 gaaatgatga cagcctgtca gggagtggga ggacccggcc acaaagcaag agttttagct
1081 gaagcaatga gccaagtaac aaattcagct accataatga tgcagagagg caattttaag
1141 aaccaaagaa aaattgttaa gtgtttcaat tgtggcaaag aagggcacat agccaaaaat
1201 tgcagggctc ctaggagaaa gggctgttgg aaatgtggaa aggaaggaca ccaaatgaaa
1261 gattgtacag agagacaggc taatttttta gggaagatct ggccttccca caagggaagg
1321 ccagggaatt ttcttcagag cagaccagag ccaacagccc caccagagga gagcttcagg
1381 tttggggaag agacaactcc ccctcagaga cgggagtcga tagacaagga gaagtatcct
1441 ttaacttccc tcagatcact ctttggcaac gacccctcgt cacaataaag gtaggggggc
1501 aaataaagga agctctatta gatacaggag cagatgatac agtattagaa gaaatggctt
1561 tgccaggaag atggaaacca aaaatgatag ggggaattgg aggttttatc aaagtaagac
1621 agtatgatca gataccccta gaaatctgtg gacaaaaagc tataggtaca gtattagtag
1681 gacctacacc tgtcaacata attggaagaa atctgttgac tcagattggt tgcactttaa
1741 attttcccat aagtcctatt gaacctgtac cagtaaaatt aaagccagga atggatggcc
1801 caaaagttaa gcaatggcca ttgacagaag aaaaaataaa agcattacta gaaatttgta
1861 cagaaatgga aaaggaaggg aaaatttcaa aaattgggcc tgaaaatcca tacaatactc
1921 cagtgtttgc cataaagaaa aaggacagca ctaaatggag aaaattagta gattttagag
1981 aacttaataa gaaaactcaa gacttctggg aagttcaatt aggaatacca catcccgcag
2041 ggttaaaaaa gaacaaatca gtaacagtac tagatgtggg tgatgcatat ttttcagttc
2101 ccctagataa agacttcagg aagtatactg catttaccat acctagtata aacaatgaga
2161 caccagggat tagatatcag tacaatgtgc ttccacaggg atggaaagga tcaccagcaa
2221 tattccaatg tagcatgaca aaaatcttag agccttttag gaagcaaaat ccagacatag
2281 ttatctatca atacatggat gacttgtatg taggatctga cttagaaata gggcagcata
2341 gaacaaaaat agaggaactg agacaacatc tgttgaagtg ggggtttacc acaccagaca
2401 aaaaacatca gaaagaacct ccattccttt ggatgggtta tgaactccat cctgataaat
2461 ggacagtaca gcctatagtg ctgccaaaca aagacagctg gactgtcaat gacatacaga
2521 agctagtggg aaagttgaat tgggcaagtc agatttatcc agggattaaa gtaaagcaat
2581 tatgtagact ccttagggga accaaagcac taacagaagt agtaccacta acagaagaag
2641 cagagctaga actggcagaa aacagggaga ttctaaaaga accagtgcat ggagtgtatt
2701 atgacccatc aaaagactta atagcagaaa tacagaagca gggagaaggc caatggacat
2761 atcaaattta tcaagagcca tttaagaatc tgaaaacagg aaaatatgca agaatgaggg
2821 gtgcccacac taatgatgta aaacaattaa cagaggcagt gcaaaaaata tccacagaaa
2881 gcataataat atggggaaag acccctaaat ttagactacc catacaaaaa gaaacatggg
2941 aatcatggtg gacagactat tggcaagcca cctggattcc tgagtgggag tttgtcaata
3001 cccctccctt agtgaaatta tggtaccagt tagaaaagga acccataata ggagcagaaa
3061 ccttctatgt agatggggca gctaataggg agactaaatt aggaaaagca ggatatgtta
3121 ctaacagagg aagacaaaaa gttgtctccc taactgacac aaccaatcag aaggctgagt
3181 tacaagcaat tcatttagct ttgcaggatt caggattaga agtaaaccta gtaacagact
3241 cacaatacgc attaggaatc attcaagcac aaccagataa aagtgaatca gatttagtca
3301 atcaaataat agagcagtta ataaaaaagg agaaggtcta catggcatgg gtaccagcac
3361 acaaaggaat tggaggaaat gaacaagtag ataaattagt cagtgctgga gtcaggaaga
3421 tactattttt agatggaata gataaagccc aagaagaaca tgaaaaatat cacagtaatt
3481 ggagagcaat ggctagtgat tttaacctgc cacctgtagt agcaaaagaa atagtagcca
3541 gctgtgataa atgccaattg aaaggagaag ccatgcatgg acaagtagac tgtagtccag
3601 gaatgtggca actagattgt acacatttag aaggaaaagt tatcctggta gcagttcata
3661 tagccagtgg gtatatagaa gcagaagtta ttccagcaga gacagggcag gaaacagcat
3721 actttctttt aaaattagca ggaagatggc cagtaaaaac aatacataca gacaatggca
3781 gcaatttcac cagtactaca gttaaagccg cctgttggtg ggcagggatc aagcaggaat
3841 ttggcattcc ctacaatccc caaagtcaag gagcagtaga atctatgaat aaagaattaa
3901 agaaaattat aggacaggta agagatcagg ctgaacatct taagacagct gtacaaatgg
3961 cagtattcat tcacaatttt aaaagaaaag gggggattgg ggggtacagt gcaggggaaa
4021 gaatagtaga cataatagca acagacatac aaactaaaga attacaaaaa caaattacaa
4081 aaattcaaaa ttttcgggtt tattacaggg acagcagaga tccactttgg aaaggaccag
4141 caaagcttct ctggaaaggt gaaggggcag tagtaataca agacaatagt gagataaaag
4201 tagtgccaag aagaaaagca aagatcatta gggattatgg aaaacagatg gcaggtgatg
4261 attgtgtggc aagtggacag gatgagaatt agaacatgga aaagtttagt aaaacaccat
4321 atgtatagat cagggaaggc taggggatgg ttttatagac accactatga tagccatcat
4381 ccaaaaataa gttcagaagt acacatccca ctaggggatg ctagattggt aataacaaca
4441 tattggggtc tgcatacagg agaaagggaa tggcatttgg gtcagggagt ttccatagaa
4501 tggaggaaaa ggagatatag cacacaagta gaccctggcc tagcagacca actaattcat
4561 atgtattact ttgattgttt ttcagaatct gctataagaa atgccatatt aggacatata
4621 gttagtccta gttgtgatta tcgagcagga cataacaagg taggatcttt acagtacttg
4681 gcactaacag cattaataaa accaaaaaag ataaagccgc ctttgcctag tgttaggaaa
4741 ctgacagagg atagatggaa cgcgccccag aagatcaagg gccacagaga gaaccataca
4801 atgaatggac actagagctt ttagaggagc ttaagaatga agcagtgaga cattttccta
4861 gggtgtggct tcatagctta gggcaacata tctatgagac ttatggggat acttggacag
4921 gagtagaagc cataataaga attctacaac aactgctgtt tattcatttc agaattgggt
4981 gtcaacatag cagaataggc attactcgac agaggagagc aagaaatgga gccagtagat
5041 cctagactag agccctggaa gcatccagga agtcagccta ggactgcttg taccaagtgc
5101 tattgtaaaa agtgttgctt gcattgccaa gtctgcttct taacaaaagg cttaggcatc
5161 tcctatggca ggaagaagcg gagacaacga cgaagaactc ctaaggacag tcagactcat
5221 caagttcctc taccagagca gtaagtagta catgtaatgc aacccttaca aatagcagca
5281 atagtagcat tagtagtagt aacaataata gcaatagttg tgtggtccat agtaggcata
5341 gaatatagga aaatattaag acaaagaaaa atagacaggt taatagatag aataagagat
5401 agagcagaag acagtggcaa tgagagtgat ggggatcaag aggaattatc agcacttgtg
5461 gaaatggggc actatgctca ccatgctcct tgggatatta atgatctgta gtgttgcagg
5521 acaattgtgg gtaacagtat attatggggt acctgtgtgg aaagaggcaa acaccactct
5581 attttgtgca tcagatgcta aagcatatga tacagaagta cataatgttt gggccacaca
5641 tgcctgtgta cccacagatc ccaacccaca agaagtagta ttgaaaaatg tgacagaaaa
5701 ttttaacatg tggaaaaata ccatggtgga acagatgcat gaggatataa tcagtttatg
5761 ggatcaaagc ctaaagccat gtgtaaaatt aaccccactc tgtgttactt taaattgtag
5821 tgatgctaac atcactgttg ctaacctcac taacacccca tttgataact tgacaaggat
5881 agagcaaggg gaaataaaaa actgctcttt caacatcacc tcaagcataa gagataagat
5941 gcagaaagaa tatgcacttt tgtataaagc tgatatagta caaataggta ataataatgc
6001 tagctatagg ttaataagtt gtaacacctc agtcattaca caagcctgtc caaaagtaac
6061 ctttgaacca atccccatac attactgtgc ccctgctggt tttgcgattc taaaatgtaa
6121 caataagacg ttcagtggaa aaggagaatg taaaaatgtc agcacagtac aatgtacaca
6181 tggaattaag ccagtagtat caactcaact gctgttaaat ggcagcctag cagaaaaaga
6241 gatagtaatt agatctgaca atttctcgga caatgctaag accataatag tacagctgaa
6301 tgagtctata gtaattaatt gtacaagacc cagcaacaac acaagaaaag gtataaatat
6361 aggaccaggg agagcatggt atgcaacagg agaggtaaca ggggatataa gaaaggcaca
6421 ttgtaacatt agtacagcaa gatggaataa cactttaaaa caggtagtaa gaaaattaag
6481 agaacagttt gggaataaaa caataatctt taatcaatcc tcaggaggag acccagagat
6541 tgtaatgcac agttttaatt gtggagggga atttttctac tgtaacacaa caagactgtt
6601 taatagtact tggatttgga atgttactac aggagaagag tggtcaaatg acactgaaac
6661 aaatgacaca atcacactcc cgtgcagaat aagacaaatt ataaatatgt ggcaggaagt
6721 aggaaaagca atgtatgccc ctcccatcag aggatcaatt agctgttcat caaatattac
6781 agggttactg ttaacaagag atggtggtga tattaatacc tcgaacaata gtgaaacctt
6841 cagacctgga ggaggaaata tgaaggacaa ttggagaagt gaattatata aatacaaagt
6901 agtaaaaatt gaaccattag gaatagcacc caccagggca aggagaagag tggtgcagag
6961 agagaaaaga gcagtgggaa taggagcttt gttccttggg ttcttgggag cagcaggaag
7021 cactatgggc gcagcgtcaa tgacgctgac ggtacaagcc agactattat tgtctggtat
7081 agtgcaacag cagaacaatt tgctgagggc tattgaggcg caacagcatc tgttgcaact
7141 cacagtctgg ggcatcaagc agctccaggc aagagtcctg gctgtggaaa gatacctaaa
7201 ggatcaacag ctcctgggaa tttggggttg ctctggaaaa ctcatctgca ccactactgt
7261 gccttggaat actagttgga gtaataaatc tctggattac atttggaata acatgacctg
7321 gatgcagtgg gaaaaagaaa ttgacaatta cacagactta atatataatt taattgagga
7381 atcgcaaaac cagcaagaaa agaatgaaca agaattatta gcattagata aatgggcaag
7441 tttgtggaat tggtttgaca tatcaaagtg gctgtggtat ataaaaatat tcataatgat
7501 agtaggaggc ttgataggtt taagaatagt ttttactgta ctttcaatag tgaacagagt
7561 taggcaggga tactcaccat tatcatttca gacccgcccc ccagcagcga ggggacccga
7621 caggcccgaa ggaatcgaag aagaaggtgg agagagagac agagacagat ccggtccatt
7681 agtggatgga ttcttagcaa ttttctgggt cgatctacgg agcctgttcc tcttcagcta
7741 ccgccacttg agagacttac tattgattgt agcgaggact gtggaacttc tgggacgcag
7801 ggggtgggaa atcctcaaat atctgtggaa tctcctacag tattggagtc aggaactgaa
7861 gaatagtgct gttagcttgc tcaacaccac agccatagca gtagctgagg gaacagatag
7921 ggttatagaa gtattacaaa gagcttttag ggctatcctc catataccta caagaataag
7981 acagggcttg gaaagggctt tgctataaag atgggtggca agtggtcaaa aagtagtgtg
8041 gttgggtggc ctgctgtaag ggaaagaatg agacgaactg agccagcagc aattggggtg
8101 ggggcagcat ctcgagacct ggaaaaacat ggagcaatca caagtagcaa tacagcaact
8161 aacaacgctg cttgtgcctg gctagaagct caagaggacg aggaggtggg ttttccagtc
8221 agacctcagg tacctttaag accaataacc tacaaggcag ctgtagatct tagccatttt
8281 ttaaaagaaa aggggggact ggaagggtta atttggtccc agaaaagaca agacatcctt
8341 gatttgtggg tctaccacac acaaggatac ttccctgatt ggcagaacta cacaccaggg
8401 ccagggatca gatatccact gacctttgga tggtgcttca agctagtacc agttgcacca
8461 gagaaggtag aagaggccaa tgaaggagag aacaacagcc tgttacaccc tatgagcctg
8521 catgggatgg aggactcgga gggggaagta ttacagtgga agtttgatag ccgcctcgca
8581 tttcgtcaca tggcccgaga gctgcatccg gagtattaca aggactgctg actgttgaca
8641 tctacaagaa ctgctgacag cgagtttcta caagggactt tccgctggga ctttccaggg
8701 gaggcgtggc ctgggcggga ctggggagtg gcgagccctc agatgctgca tataagcagc
8761 tgctttttgc ctgtactggg tctctctggt tagaccagat ctgagcctgg gagctctctg
8821 gctgactagg gaacccactg cttaagcctc aataaagctt gccttgagtg cttcaaaaaa
8881 aaaaaaaaaa aaaaaaaaaa a
//
last modified: Tue May 31 10:56 2022