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LOCUS	    JX503083		    8901 bp    RNA     linear	VRL 19-SEP-2012
DEFINITION  UNVERIFIED: HIV-1 isolate HIV-1/USA/BID-G15482 from USA genomic
	    sequence
ACCESSION   JX503083
VERSION     JX503083.1 GI:404434699
KEYWORDS    UNVERIFIED.
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 8901)
            Show all sequences for reference 1
  AUTHORS   Malboeuf,C.M., Yang,X., Charlebois,P., Qu,J., Berlin,A.M.,
	    Casali,M., Pesko,K.N., Boutwell,C.L., Devincenzo,J.P., Ebel,G.D.,
	    Allen,T.M., Zody,M.C., Henn,M.R. and Levin,J.Z.
  TITLE     Complete viral RNA genome sequencing of ultra-low copy samples by
	    sequence-independent amplification.
  JOURNAL   Nucleic Acids Res. 2012 Sep 8.
  PUBMED    22962364
REFERENCE   2 (bases 1 to 8901)
            Show all sequences for reference 2
  AUTHORS   Malboeuf,C.M., Yang,X., Charlebois,P., Qu,J., Berlin,A.M.,
	    Casali,M., Pesko,K.N., Boutwell,C.L., Devincenzo,J.P., Ebel,G.D.,
	    Allen,T.M., Zody,M.C., Henn,M.R. and Levin,J.Z.
  CONSRTM   Broad Institute Genome Sequencing Platform; Broad Institute Genome
	    Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2012) Broad Institute of MIT and Harvard, 320
	    Charles St., Cambridge, MA 02141, USA
COMMENT     GenBank staff is unable to verify sequence and/or annotation
	    provided by the submitter.; ##Assembly-Data-START## Assembly Method
	    VICUNA v. 1.0 Sequencing Technology Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..8901
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="HIV-1/USA/BID-G15482"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
BASE COUNT     3238 a	1559 c	 2119 g   1985 t
ORIGIN
       1 gaaagagaca gaagcggggg aaaattagat caatgggaaa aaattcggct aaggccaggg 
      61 ggaaagaaaa aatataaatt aaaacatata gtatgggcaa gcagggagct agaacgattc 
     121 gcagttaatc ctggcctgtt agaaacatca gaaggctgta aacaaatatt agaacatcta 
     181 cagccagccc ttcggacagg atcagaagaa cttaaatcat tacataatgc agtagcagtc 
     241 ctctattgtg tacatcaaag gatagaggta agagacacca aggaagcttt agataagata 
     301 gaagaagagc aaaacaaaag taagaaaaag gcacagcaag cagcagctga cacaggaaac 
     361 aacaaccagg tcagccaaaa ttaccctata gtacagaacc tccaagggca aatggtacat 
     421 caagccatat cacctagaac tttaaatgca tgggtaaaag taatagaaga gaaggctttc 
     481 agcccagaag tgatacccat gttttcggca ttatcagaag gagccacccc aggtgattta 
     541 aataccatgc taaacacagt ggggggacat caagcagcca tgcagatgtt aaaagagacc 
     601 atcaatgagg aagctgcaga atgggataga ttgcatccag tgcaggcagg gcctattgca 
     661 ccaggccaga taagagaacc aaggggaagt gacatagcag gaactactag tacccttcag 
     721 gaacaaataa catggatgac aagtaatcca cctattccag taggagatat ctataaaaga 
     781 tggataatac tgggattaaa taaaatagta aggatgtata gccctactag cattctggac 
     841 ataagacaag gaccaaaaga accctttaga gactatgtag accggttcta taaaactcta 
     901 agagccgagc aatgtacaca ggaggtaaaa aattggatga cagaaacctt gttggtccaa 
     961 aatgcgaatc cagattgtag gactattttg aaagcattgg gaccagcagc tacactagaa 
    1021 gaaatgatga cagcctgtca gggagtggga ggacccggcc acaaagcaag agttttagct 
    1081 gaagcaatga gccaagtaac aaattcagct accataatga tgcagagagg caattttaag 
    1141 aaccaaagaa aaattgttaa gtgtttcaat tgtggcaaag aagggcacat agccaaaaat 
    1201 tgcagggctc ctaggagaaa gggctgttgg aaatgtggaa aggaaggaca ccaaatgaaa 
    1261 gattgtacag agagacaggc taatttttta gggaagatct ggccttccca caagggaagg 
    1321 ccagggaatt ttcttcagag cagaccagag ccaacagccc caccagagga gagcttcagg 
    1381 tttggggaag agacaactcc ccctcagaga cgggagtcga tagacaagga gaagtatcct 
    1441 ttaacttccc tcagatcact ctttggcaac gacccctcgt cacaataaag gtaggggggc 
    1501 aaataaagga agctctatta gatacaggag cagatgatac agtattagaa gaaatggctt 
    1561 tgccaggaag atggaaacca aaaatgatag ggggaattgg aggttttatc aaagtaagac 
    1621 agtatgatca gataccccta gaaatctgtg gacaaaaagc tataggtaca gtattagtag 
    1681 gacctacacc tgtcaacata attggaagaa atctgttgac tcagattggt tgcactttaa 
    1741 attttcccat aagtcctatt gaacctgtac cagtaaaatt aaagccagga atggatggcc 
    1801 caaaagttaa gcaatggcca ttgacagaag aaaaaataaa agcattacta gaaatttgta 
    1861 cagaaatgga aaaggaaggg aaaatttcaa aaattgggcc tgaaaatcca tacaatactc 
    1921 cagtgtttgc cataaagaaa aaggacagca ctaaatggag aaaattagta gattttagag 
    1981 aacttaataa gaaaactcaa gacttctggg aagttcaatt aggaatacca catcccgcag 
    2041 ggttaaaaaa gaacaaatca gtaacagtac tagatgtggg tgatgcatat ttttcagttc 
    2101 ccctagataa agacttcagg aagtatactg catttaccat acctagtata aacaatgaga 
    2161 caccagggat tagatatcag tacaatgtgc ttccacaggg atggaaagga tcaccagcaa 
    2221 tattccaatg tagcatgaca aaaatcttag agccttttag gaagcaaaat ccagacatag 
    2281 ttatctatca atacatggat gacttgtatg taggatctga cttagaaata gggcagcata 
    2341 gaacaaaaat agaggaactg agacaacatc tgttgaagtg ggggtttacc acaccagaca 
    2401 aaaaacatca gaaagaacct ccattccttt ggatgggtta tgaactccat cctgataaat 
    2461 ggacagtaca gcctatagtg ctgccaaaca aagacagctg gactgtcaat gacatacaga 
    2521 agctagtggg aaagttgaat tgggcaagtc agatttatcc agggattaaa gtaaagcaat 
    2581 tatgtagact ccttagggga accaaagcac taacagaagt agtaccacta acagaagaag 
    2641 cagagctaga actggcagaa aacagggaga ttctaaaaga accagtgcat ggagtgtatt 
    2701 atgacccatc aaaagactta atagcagaaa tacagaagca gggagaaggc caatggacat 
    2761 atcaaattta tcaagagcca tttaagaatc tgaaaacagg aaaatatgca agaatgaggg 
    2821 gtgcccacac taatgatgta aaacaattaa cagaggcagt gcaaaaaata tccacagaaa 
    2881 gcataataat atggggaaag acccctaaat ttagactacc catacaaaaa gaaacatggg 
    2941 aatcatggtg gacagactat tggcaagcca cctggattcc tgagtgggag tttgtcaata 
    3001 cccctccctt agtgaaatta tggtaccagt tagaaaagga acccataata ggagcagaaa 
    3061 ccttctatgt agatggggca gctaataggg agactaaatt aggaaaagca ggatatgtta 
    3121 ctaacagagg aagacaaaaa gttgtctccc taactgacac aaccaatcag aaggctgagt 
    3181 tacaagcaat tcatttagct ttgcaggatt caggattaga agtaaaccta gtaacagact 
    3241 cacaatacgc attaggaatc attcaagcac aaccagataa aagtgaatca gatttagtca 
    3301 atcaaataat agagcagtta ataaaaaagg agaaggtcta catggcatgg gtaccagcac 
    3361 acaaaggaat tggaggaaat gaacaagtag ataaattagt cagtgctgga gtcaggaaga 
    3421 tactattttt agatggaata gataaagccc aagaagaaca tgaaaaatat cacagtaatt 
    3481 ggagagcaat ggctagtgat tttaacctgc cacctgtagt agcaaaagaa atagtagcca 
    3541 gctgtgataa atgccaattg aaaggagaag ccatgcatgg acaagtagac tgtagtccag 
    3601 gaatgtggca actagattgt acacatttag aaggaaaagt tatcctggta gcagttcata 
    3661 tagccagtgg gtatatagaa gcagaagtta ttccagcaga gacagggcag gaaacagcat 
    3721 actttctttt aaaattagca ggaagatggc cagtaaaaac aatacataca gacaatggca 
    3781 gcaatttcac cagtactaca gttaaagccg cctgttggtg ggcagggatc aagcaggaat 
    3841 ttggcattcc ctacaatccc caaagtcaag gagcagtaga atctatgaat aaagaattaa 
    3901 agaaaattat aggacaggta agagatcagg ctgaacatct taagacagct gtacaaatgg 
    3961 cagtattcat tcacaatttt aaaagaaaag gggggattgg ggggtacagt gcaggggaaa 
    4021 gaatagtaga cataatagca acagacatac aaactaaaga attacaaaaa caaattacaa 
    4081 aaattcaaaa ttttcgggtt tattacaggg acagcagaga tccactttgg aaaggaccag 
    4141 caaagcttct ctggaaaggt gaaggggcag tagtaataca agacaatagt gagataaaag 
    4201 tagtgccaag aagaaaagca aagatcatta gggattatgg aaaacagatg gcaggtgatg 
    4261 attgtgtggc aagtggacag gatgagaatt agaacatgga aaagtttagt aaaacaccat 
    4321 atgtatagat cagggaaggc taggggatgg ttttatagac accactatga tagccatcat 
    4381 ccaaaaataa gttcagaagt acacatccca ctaggggatg ctagattggt aataacaaca 
    4441 tattggggtc tgcatacagg agaaagggaa tggcatttgg gtcagggagt ttccatagaa 
    4501 tggaggaaaa ggagatatag cacacaagta gaccctggcc tagcagacca actaattcat 
    4561 atgtattact ttgattgttt ttcagaatct gctataagaa atgccatatt aggacatata 
    4621 gttagtccta gttgtgatta tcgagcagga cataacaagg taggatcttt acagtacttg 
    4681 gcactaacag cattaataaa accaaaaaag ataaagccgc ctttgcctag tgttaggaaa 
    4741 ctgacagagg atagatggaa cgcgccccag aagatcaagg gccacagaga gaaccataca 
    4801 atgaatggac actagagctt ttagaggagc ttaagaatga agcagtgaga cattttccta 
    4861 gggtgtggct tcatagctta gggcaacata tctatgagac ttatggggat acttggacag 
    4921 gagtagaagc cataataaga attctacaac aactgctgtt tattcatttc agaattgggt 
    4981 gtcaacatag cagaataggc attactcgac agaggagagc aagaaatgga gccagtagat 
    5041 cctagactag agccctggaa gcatccagga agtcagccta ggactgcttg taccaagtgc 
    5101 tattgtaaaa agtgttgctt gcattgccaa gtctgcttct taacaaaagg cttaggcatc 
    5161 tcctatggca ggaagaagcg gagacaacga cgaagaactc ctaaggacag tcagactcat 
    5221 caagttcctc taccagagca gtaagtagta catgtaatgc aacccttaca aatagcagca 
    5281 atagtagcat tagtagtagt aacaataata gcaatagttg tgtggtccat agtaggcata 
    5341 gaatatagga aaatattaag acaaagaaaa atagacaggt taatagatag aataagagat 
    5401 agagcagaag acagtggcaa tgagagtgat ggggatcaag aggaattatc agcacttgtg 
    5461 gaaatggggc actatgctca ccatgctcct tgggatatta atgatctgta gtgttgcagg 
    5521 acaattgtgg gtaacagtat attatggggt acctgtgtgg aaagaggcaa acaccactct 
    5581 attttgtgca tcagatgcta aagcatatga tacagaagta cataatgttt gggccacaca 
    5641 tgcctgtgta cccacagatc ccaacccaca agaagtagta ttgaaaaatg tgacagaaaa 
    5701 ttttaacatg tggaaaaata ccatggtgga acagatgcat gaggatataa tcagtttatg 
    5761 ggatcaaagc ctaaagccat gtgtaaaatt aaccccactc tgtgttactt taaattgtag 
    5821 tgatgctaac atcactgttg ctaacctcac taacacccca tttgataact tgacaaggat 
    5881 agagcaaggg gaaataaaaa actgctcttt caacatcacc tcaagcataa gagataagat 
    5941 gcagaaagaa tatgcacttt tgtataaagc tgatatagta caaataggta ataataatgc 
    6001 tagctatagg ttaataagtt gtaacacctc agtcattaca caagcctgtc caaaagtaac 
    6061 ctttgaacca atccccatac attactgtgc ccctgctggt tttgcgattc taaaatgtaa 
    6121 caataagacg ttcagtggaa aaggagaatg taaaaatgtc agcacagtac aatgtacaca 
    6181 tggaattaag ccagtagtat caactcaact gctgttaaat ggcagcctag cagaaaaaga 
    6241 gatagtaatt agatctgaca atttctcgga caatgctaag accataatag tacagctgaa 
    6301 tgagtctata gtaattaatt gtacaagacc cagcaacaac acaagaaaag gtataaatat 
    6361 aggaccaggg agagcatggt atgcaacagg agaggtaaca ggggatataa gaaaggcaca 
    6421 ttgtaacatt agtacagcaa gatggaataa cactttaaaa caggtagtaa gaaaattaag 
    6481 agaacagttt gggaataaaa caataatctt taatcaatcc tcaggaggag acccagagat 
    6541 tgtaatgcac agttttaatt gtggagggga atttttctac tgtaacacaa caagactgtt 
    6601 taatagtact tggatttgga atgttactac aggagaagag tggtcaaatg acactgaaac 
    6661 aaatgacaca atcacactcc cgtgcagaat aagacaaatt ataaatatgt ggcaggaagt 
    6721 aggaaaagca atgtatgccc ctcccatcag aggatcaatt agctgttcat caaatattac 
    6781 agggttactg ttaacaagag atggtggtga tattaatacc tcgaacaata gtgaaacctt 
    6841 cagacctgga ggaggaaata tgaaggacaa ttggagaagt gaattatata aatacaaagt 
    6901 agtaaaaatt gaaccattag gaatagcacc caccagggca aggagaagag tggtgcagag 
    6961 agagaaaaga gcagtgggaa taggagcttt gttccttggg ttcttgggag cagcaggaag 
    7021 cactatgggc gcagcgtcaa tgacgctgac ggtacaagcc agactattat tgtctggtat 
    7081 agtgcaacag cagaacaatt tgctgagggc tattgaggcg caacagcatc tgttgcaact 
    7141 cacagtctgg ggcatcaagc agctccaggc aagagtcctg gctgtggaaa gatacctaaa 
    7201 ggatcaacag ctcctgggaa tttggggttg ctctggaaaa ctcatctgca ccactactgt 
    7261 gccttggaat actagttgga gtaataaatc tctggattac atttggaata acatgacctg 
    7321 gatgcagtgg gaaaaagaaa ttgacaatta cacagactta atatataatt taattgagga 
    7381 atcgcaaaac cagcaagaaa agaatgaaca agaattatta gcattagata aatgggcaag 
    7441 tttgtggaat tggtttgaca tatcaaagtg gctgtggtat ataaaaatat tcataatgat 
    7501 agtaggaggc ttgataggtt taagaatagt ttttactgta ctttcaatag tgaacagagt 
    7561 taggcaggga tactcaccat tatcatttca gacccgcccc ccagcagcga ggggacccga 
    7621 caggcccgaa ggaatcgaag aagaaggtgg agagagagac agagacagat ccggtccatt 
    7681 agtggatgga ttcttagcaa ttttctgggt cgatctacgg agcctgttcc tcttcagcta 
    7741 ccgccacttg agagacttac tattgattgt agcgaggact gtggaacttc tgggacgcag 
    7801 ggggtgggaa atcctcaaat atctgtggaa tctcctacag tattggagtc aggaactgaa 
    7861 gaatagtgct gttagcttgc tcaacaccac agccatagca gtagctgagg gaacagatag 
    7921 ggttatagaa gtattacaaa gagcttttag ggctatcctc catataccta caagaataag 
    7981 acagggcttg gaaagggctt tgctataaag atgggtggca agtggtcaaa aagtagtgtg 
    8041 gttgggtggc ctgctgtaag ggaaagaatg agacgaactg agccagcagc aattggggtg 
    8101 ggggcagcat ctcgagacct ggaaaaacat ggagcaatca caagtagcaa tacagcaact 
    8161 aacaacgctg cttgtgcctg gctagaagct caagaggacg aggaggtggg ttttccagtc 
    8221 agacctcagg tacctttaag accaataacc tacaaggcag ctgtagatct tagccatttt 
    8281 ttaaaagaaa aggggggact ggaagggtta atttggtccc agaaaagaca agacatcctt 
    8341 gatttgtggg tctaccacac acaaggatac ttccctgatt ggcagaacta cacaccaggg 
    8401 ccagggatca gatatccact gacctttgga tggtgcttca agctagtacc agttgcacca 
    8461 gagaaggtag aagaggccaa tgaaggagag aacaacagcc tgttacaccc tatgagcctg 
    8521 catgggatgg aggactcgga gggggaagta ttacagtgga agtttgatag ccgcctcgca 
    8581 tttcgtcaca tggcccgaga gctgcatccg gagtattaca aggactgctg actgttgaca 
    8641 tctacaagaa ctgctgacag cgagtttcta caagggactt tccgctggga ctttccaggg 
    8701 gaggcgtggc ctgggcggga ctggggagtg gcgagccctc agatgctgca tataagcagc 
    8761 tgctttttgc ctgtactggg tctctctggt tagaccagat ctgagcctgg gagctctctg 
    8821 gctgactagg gaacccactg cttaagcctc aataaagctt gccttgagtg cttcaaaaaa 
    8881 aaaaaaaaaa aaaaaaaaaa a
//
last modified: Tue May 31 10:56 2022


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