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LOCUS JX497801 2722 bp RNA linear VRL 04-FEB-2013
DEFINITION Simian immunodeficiency virus isolate M381.P2E8 from USA rev
protein (rev) gene, complete cds; tat protein (tat) gene, partial
cds; envelope glycoprotein (env) gene, complete cds; and nef
protein (nef) gene, partial cds
ACCESSION JX497801
VERSION JX497801.1 GI:444338603
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2722)
Show all sequences for reference 1
AUTHORS Pegu,P., Vaccari,M., Gordon,S., Keele,B.F., Doster,M., Guan,Y.,
Ferrari,G., Pal,R., Ferrari,M.G., Whitney,S., Hudacik,L.,
Billings,E., Rao,M., Montefiori,D., Tomaras,G., Alam,S.M.,
Fenizia,C., Lifson,J.D., Stablein,D., Tartaglia,J., Michael,N.,
Kim,J., Venzon,D. and Franchini,G.
TITLE Antibodies with High Avidity to the gp120 Envelope Protein in
Protection from Simian Immunodeficiency Virus SIVmac251 Acquisition
in an Immunization Regimen That Mimics the RV-144 Thai Trial
JOURNAL J. Virol. 87 (3), 1708-1719 (2013)
PUBMED 23175374
REFERENCE 2 (bases 1 to 2722)
Show all sequences for reference 2
AUTHORS Pegu,P., Vaccari,M., Gordon,S., Keele,B.F., Doster,M., Guan,Y.,
Ferrari,G., Pal,R., Ferrari,M.G., Whitney,S., Hudacik,L.,
Billings,E., Rao,M., Montefiori,D., Tomaras,G., Alam,M.S.,
Fenizia,C., Lifson,J.D., Stablein,D., Tartaglia,J., Michael,N.,
Kim,J., Venzon,D. and Franchini,G.
TITLE Direct Submission
JOURNAL Submitted (06-AUG-2012) AIDS and Cancer Virus Program,
SAIC-Frederick, Inc. Frederick National Lab, 1050 Boyles Street,
Frederick, MD 21702, USA
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 4.8
Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2722
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="M381.P2E8"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
/collection_date="15-Jul-2010"
gene 1..2538
/gene="rev"
CDS join(1..70,2285..2538)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AGE03547.1"
/db_xref="GI:444338604"
/translation="MSSHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
QRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPGALCDPTENS
RSPQD"
gene <1..2381
/gene="tat"
CDS join(<1..70,2285..2381)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="AGE03548.1"
/db_xref="GI:444338605"
/translation="EQSRKRRRTPKKAKANTSSASNKSIPNRTRHCQPEKAKEETVEA
AVATAPGLGR"
gene 77..2722
/gene="env"
CDS 77..2722
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGE03549.1"
/db_xref="GI:444338606"
/translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
KLSPLCITMRCNKSETDKWGLTKSSATAAPTTTTKATSTKPIDMVNETSSCITHDNCT
GLEQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSVI
QESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTW
FGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHS
QPVNDRPNQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTF
MWTNCRGEFLYCKMNWFLNWIEDRNLTTQRPKERHRRNYVPCHIRQIINTWHKVGKNV
YLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPIG
LAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQ
QQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVP
WPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGN
WFDLASWIRYIQYGIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQIHTQ
QDPALPTREGKGGDGGGSGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQ
ILQPILQGLSATLQRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWGDLWE
TLRRGGRWILAIPRRIRQGLELTLL"
gene 2556..>2722
/gene="nef"
CDS 2556..>2722
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AGE03550.1"
/db_xref="GI:444338607"
/translation="MGGAISMRRSKPAGDLRQRLLRARGETYGRLLGEVEDGSSQSLG
GLDRGLSSLSC"
BASE COUNT 868 a 520 c 657 g 677 t
ORIGIN
1 atgagcagtc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg
61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt
121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg
181 gaggaatgcg acaattcccc tcttctgtgc aaccaagaat agggatactt ggggaacaac
241 tcagtgccta ccagataatg gtgattattc agaattggcc cttaatgtta cagaaagctt
301 tgatgcttgg gagaatacag tcacagaaca ggcaatagag gatgtatggc aactctttga
361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa
421 aagtgagaca gacaaatggg gattgacaaa atcatcagca acagcagcac caacaacaac
481 aacaaaggca acatcaacaa agccaataga catggtcaat gagactagtt cttgtataac
541 tcatgataat tgcacaggct tggaacaaga gcaaatgata ggctgtaaat tcaatatgac
601 agggttaaaa agagacaaga caaaggagta caatgaaact tggtactcta cagatttggt
661 ttgtgagcaa gggaatagca ctgataatga aagtagatgc tacatgaatc actgtaacac
721 ttctgttatc caagagtctt gtgacaaaca ttattgggat actattagat ttaggtattg
781 tgcacctcca ggttatgctt tgcttagatg taatgacaca aattattcag gctttatgcc
841 taaatgttct aaggtggtgg tctcttcatg cacaaggatg atggagacac agacttctac
901 ttggtttggc tttaatggaa ctagagcaga aaatagaact tatatttact ggcatggtag
961 ggataatagg actataatta gtttaaataa gtattataat ctaacaatga aatgtagaag
1021 accaggaaat aagacagttt taccagtcac cattatgtct ggattggttt tccactcaca
1081 accagtcaat gataggccaa atcaggcatg gtgttggttt ggaggaaatt ggaaggatgc
1141 aataaaagag gtgaagcaga ccattgtcaa acatcccagg tatactggaa ctaacaatac
1201 tgataaaatc aatttgacgg ctcctagagg aggagatccg gaagttacct tcatgtggac
1261 aaattgcaga ggagagtttc tctactgtaa aatgaattgg tttctaaatt ggatagaaga
1321 taggaatcta actacccaga ggccaaagga acggcataga aggaattacg tgccatgtca
1381 tattagacaa ataatcaaca cttggcataa agtaggcaaa aatgtttatt tgcctccaag
1441 agagggagac ctcacgtgta actccacagt gaccagtctc atagcaaaca tagattggac
1501 tgatggaaac caaactaata tcaccatgag tgcagaggtg gcagaactgt atcgattgga
1561 attgggagat tataaattag tagagatcac tccaattggc ttggccccca cagatgtgaa
1621 gaggtacact actggtggca cctcaagaaa taaaagaggg gtctttgtgc tagggttctt
1681 gggttttctc gcaacggcag gttctgcaat gggcgcggcg tcgttgacgc tgaccgctca
1741 gtcccggact ttattggctg ggatagtgca gcaacagcaa cagctgttgg acgtggtcaa
1801 gagacaacaa gaattgttgc gactgaccgt ctggggaaca aagaacctcc agactagggt
1861 cactgccatc gagaagtact taaaggacca ggcgcaactg aatgcttggg gatgtgcgtt
1921 tagacaagtc tgccacacta ctgtaccatg gccaaatgca agtctaacac cagattggaa
1981 caatgacact tggcaagagt gggagcgaaa ggttgacttc ttggaggaaa atataacggc
2041 ccttctagaa gaggcacaaa ttcaacaaga gaagaacatg tatgaattac aaaagttgaa
2101 tagctgggat gtgtttggca attggtttga ccttgcttct tggataaggt atatacaata
2161 tggaatttat atagttgtag gagtaatact gttaagaata gtgatctata tagtacaaat
2221 gctagctaag ttaaggcagg ggtataggcc agtgttctct tccccaccct cttatttcca
2281 gcagatccat acccaacagg acccggcact gccaaccaga gaaggcaaag gaggagacgg
2341 tggaggcagc ggtggcaaca gctcctggcc ttggcagata gaatatattc atttcctgat
2401 ccgccaactg atacgcctct tgacttggct attcagcaac tgcagaacct tgctatcgag
2461 agtataccag atcctccaac caatactcca ggggctctct gcgaccctac agagaattcg
2521 agaagtcctc aggactgaac tgacctacct acaatatggg tggagctatt tccatgaggc
2581 ggtccaagcc ggctggagat ctgcgacaga gactcttgcg ggcgcgtggg gagacttatg
2641 ggagactctt aggagaggtg gaagatggat cctcgcaatc cctaggagga ttagacaggg
2701 gcttgagctc actctcttgt ga
//
last modified: Tue May 31 10:56 2022