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LOCUS	    JX497801		    2722 bp    RNA     linear	VRL 04-FEB-2013
DEFINITION  Simian immunodeficiency virus isolate M381.P2E8 from USA rev
	    protein (rev) gene, complete cds; tat protein (tat) gene, partial
	    cds; envelope glycoprotein (env) gene, complete cds; and nef
	    protein (nef) gene, partial cds
ACCESSION   JX497801
VERSION     JX497801.1 GI:444338603
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2722)
            Show all sequences for reference 1
  AUTHORS   Pegu,P., Vaccari,M., Gordon,S., Keele,B.F., Doster,M., Guan,Y.,
	    Ferrari,G., Pal,R., Ferrari,M.G., Whitney,S., Hudacik,L.,
	    Billings,E., Rao,M., Montefiori,D., Tomaras,G., Alam,S.M.,
	    Fenizia,C., Lifson,J.D., Stablein,D., Tartaglia,J., Michael,N.,
	    Kim,J., Venzon,D. and Franchini,G.
  TITLE     Antibodies with High Avidity to the gp120 Envelope Protein in
	    Protection from Simian Immunodeficiency Virus SIVmac251 Acquisition
	    in an Immunization Regimen That Mimics the RV-144 Thai Trial
  JOURNAL   J. Virol. 87 (3), 1708-1719 (2013)
  PUBMED    23175374
REFERENCE   2 (bases 1 to 2722)
            Show all sequences for reference 2
  AUTHORS   Pegu,P., Vaccari,M., Gordon,S., Keele,B.F., Doster,M., Guan,Y.,
	    Ferrari,G., Pal,R., Ferrari,M.G., Whitney,S., Hudacik,L.,
	    Billings,E., Rao,M., Montefiori,D., Tomaras,G., Alam,M.S.,
	    Fenizia,C., Lifson,J.D., Stablein,D., Tartaglia,J., Michael,N.,
	    Kim,J., Venzon,D. and Franchini,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2012) AIDS and Cancer Virus Program,
	    SAIC-Frederick, Inc. Frederick National Lab, 1050 Boyles Street,
	    Frederick, MD 21702, USA
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. 4.8
	    Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2722
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="M381.P2E8"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /collection_date="15-Jul-2010"
     gene	     1..2538
		     /gene="rev"
     CDS	     join(1..70,2285..2538)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AGE03547.1"
		     /db_xref="GI:444338604"
		     /translation="MSSHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
		     QRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPGALCDPTENS
		     RSPQD"
     gene	     <1..2381
		     /gene="tat"
     CDS	     join(<1..70,2285..2381)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AGE03548.1"
		     /db_xref="GI:444338605"
		     /translation="EQSRKRRRTPKKAKANTSSASNKSIPNRTRHCQPEKAKEETVEA
		     AVATAPGLGR"
     gene	     77..2722
		     /gene="env"
     CDS	     77..2722
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGE03549.1"
		     /db_xref="GI:444338606"
		     /translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
		     KLSPLCITMRCNKSETDKWGLTKSSATAAPTTTTKATSTKPIDMVNETSSCITHDNCT
		     GLEQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSVI
		     QESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTW
		     FGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHS
		     QPVNDRPNQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTF
		     MWTNCRGEFLYCKMNWFLNWIEDRNLTTQRPKERHRRNYVPCHIRQIINTWHKVGKNV
		     YLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPIG
		     LAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQ
		     QQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVP
		     WPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGN
		     WFDLASWIRYIQYGIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQIHTQ
		     QDPALPTREGKGGDGGGSGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQ
		     ILQPILQGLSATLQRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWGDLWE
		     TLRRGGRWILAIPRRIRQGLELTLL"
     gene	     2556..>2722
		     /gene="nef"
     CDS	     2556..>2722
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AGE03550.1"
		     /db_xref="GI:444338607"
		     /translation="MGGAISMRRSKPAGDLRQRLLRARGETYGRLLGEVEDGSSQSLG
		     GLDRGLSSLSC"
BASE COUNT	868 a	 520 c	  657 g    677 t
ORIGIN
       1 atgagcagtc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg 
      61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt 
     121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg 
     181 gaggaatgcg acaattcccc tcttctgtgc aaccaagaat agggatactt ggggaacaac 
     241 tcagtgccta ccagataatg gtgattattc agaattggcc cttaatgtta cagaaagctt 
     301 tgatgcttgg gagaatacag tcacagaaca ggcaatagag gatgtatggc aactctttga 
     361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa 
     421 aagtgagaca gacaaatggg gattgacaaa atcatcagca acagcagcac caacaacaac 
     481 aacaaaggca acatcaacaa agccaataga catggtcaat gagactagtt cttgtataac 
     541 tcatgataat tgcacaggct tggaacaaga gcaaatgata ggctgtaaat tcaatatgac 
     601 agggttaaaa agagacaaga caaaggagta caatgaaact tggtactcta cagatttggt 
     661 ttgtgagcaa gggaatagca ctgataatga aagtagatgc tacatgaatc actgtaacac 
     721 ttctgttatc caagagtctt gtgacaaaca ttattgggat actattagat ttaggtattg 
     781 tgcacctcca ggttatgctt tgcttagatg taatgacaca aattattcag gctttatgcc 
     841 taaatgttct aaggtggtgg tctcttcatg cacaaggatg atggagacac agacttctac 
     901 ttggtttggc tttaatggaa ctagagcaga aaatagaact tatatttact ggcatggtag 
     961 ggataatagg actataatta gtttaaataa gtattataat ctaacaatga aatgtagaag 
    1021 accaggaaat aagacagttt taccagtcac cattatgtct ggattggttt tccactcaca 
    1081 accagtcaat gataggccaa atcaggcatg gtgttggttt ggaggaaatt ggaaggatgc 
    1141 aataaaagag gtgaagcaga ccattgtcaa acatcccagg tatactggaa ctaacaatac 
    1201 tgataaaatc aatttgacgg ctcctagagg aggagatccg gaagttacct tcatgtggac 
    1261 aaattgcaga ggagagtttc tctactgtaa aatgaattgg tttctaaatt ggatagaaga 
    1321 taggaatcta actacccaga ggccaaagga acggcataga aggaattacg tgccatgtca 
    1381 tattagacaa ataatcaaca cttggcataa agtaggcaaa aatgtttatt tgcctccaag 
    1441 agagggagac ctcacgtgta actccacagt gaccagtctc atagcaaaca tagattggac 
    1501 tgatggaaac caaactaata tcaccatgag tgcagaggtg gcagaactgt atcgattgga 
    1561 attgggagat tataaattag tagagatcac tccaattggc ttggccccca cagatgtgaa 
    1621 gaggtacact actggtggca cctcaagaaa taaaagaggg gtctttgtgc tagggttctt 
    1681 gggttttctc gcaacggcag gttctgcaat gggcgcggcg tcgttgacgc tgaccgctca 
    1741 gtcccggact ttattggctg ggatagtgca gcaacagcaa cagctgttgg acgtggtcaa 
    1801 gagacaacaa gaattgttgc gactgaccgt ctggggaaca aagaacctcc agactagggt 
    1861 cactgccatc gagaagtact taaaggacca ggcgcaactg aatgcttggg gatgtgcgtt 
    1921 tagacaagtc tgccacacta ctgtaccatg gccaaatgca agtctaacac cagattggaa 
    1981 caatgacact tggcaagagt gggagcgaaa ggttgacttc ttggaggaaa atataacggc 
    2041 ccttctagaa gaggcacaaa ttcaacaaga gaagaacatg tatgaattac aaaagttgaa 
    2101 tagctgggat gtgtttggca attggtttga ccttgcttct tggataaggt atatacaata 
    2161 tggaatttat atagttgtag gagtaatact gttaagaata gtgatctata tagtacaaat 
    2221 gctagctaag ttaaggcagg ggtataggcc agtgttctct tccccaccct cttatttcca 
    2281 gcagatccat acccaacagg acccggcact gccaaccaga gaaggcaaag gaggagacgg 
    2341 tggaggcagc ggtggcaaca gctcctggcc ttggcagata gaatatattc atttcctgat 
    2401 ccgccaactg atacgcctct tgacttggct attcagcaac tgcagaacct tgctatcgag 
    2461 agtataccag atcctccaac caatactcca ggggctctct gcgaccctac agagaattcg 
    2521 agaagtcctc aggactgaac tgacctacct acaatatggg tggagctatt tccatgaggc 
    2581 ggtccaagcc ggctggagat ctgcgacaga gactcttgcg ggcgcgtggg gagacttatg 
    2641 ggagactctt aggagaggtg gaagatggat cctcgcaatc cctaggagga ttagacaggg 
    2701 gcttgagctc actctcttgt ga
//
last modified: Tue May 31 10:56 2022


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