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LOCUS JX460054 1302 bp RNA linear VRL 23-JUN-2013
DEFINITION HIV-1 isolate HIVST-003827 from USA pol protein (pol) gene, partial
cds
ACCESSION JX460054
VERSION JX460054.1 GI:508096511
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
TITLE Large-Scale Analysis of the Prevalence and Geographic Distribution
of HIV-1 Non-B Variants in the United States.
JOURNAL J. Clin. Microbiol.. 51(8); 2662-9 (2013)
PUBMED 23761148
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2012) ARUP Institute for Clinical and
Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
Lake City, UT 84108, USA
COMMENT ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="HIVST-003827"
/isolation_source="male, 2 years"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA: Indiana"
/collection_date="2008"
/note="subtype: C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGN04421.1"
/db_xref="GI:508096512"
/translation="PQITLWQRPLVTIRVGGQIKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIT
SIETVPVKLKPGMDGPKVKHWPLTEEKIKALKEICEEMEKEGKITKIGPENPYNTPIF
AIRKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPXIFQASMTKILEPFRAQNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELRNHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQMCKLLRGTKALTDIV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGDD"
BASE COUNT 516 a 211 c 277 g 294 t 4 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtcacaataa gagtaggggg ccagataaag
61 gaggctctct tagacacagg agcagatgat acagtattag aagacataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggca cagtattggt agggcctacg
241 ccygtcaaca taattggaag gaatatgttg actcagcttg ggtgcacgtt aaattttcca
301 attacttcca ttgaaacagt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aagcattggc cattgacaga agaaaaaata aaagcattaa aagaaatttg tgaagaaatg
421 gagaaggaag gaaaaatcac aaaaattggg cctgaaaatc catataacac tccaatattt
481 gccataagaa agaaggatag tactaagtgg agaaaattag tagatttcag ggaacttaat
541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac ctcacccagc aggattaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt tcctttagat
661 aaagacttca ggaaatatac tgcatttacc atacctagtg taaayaatga aacaccagga
721 attagatatc aatataatgt actcccmcaa ggatggaaag gatcaccakc aatattccag
781 gctagcatga caaaaatctt agagcccttt agggcacaaa atccagaaat agtcatctat
841 caatatatgg atgacttata tgtaggatct gacctggaaa taggacaaca tagagcaaaa
901 atagaggagt taagaaacca tctattaaag tggggattta ccacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatggga tatgaactcc atcctgacaa atggacagtg
1021 cagcctatac agctgccaga aaaggagagc tggactgtca atgatataca aaagttagtg
1081 gggaaattaa actgggcaag tcagatttac ccaggaatta aggtaaagca aatgtgtaaa
1141 cttcttaggg ggaccaaagc actaacagac atagtaccac taactgaaga agcagaatta
1201 gaattagcag agaacaggga aattctaaaa gaaccagtac atggagtata ttatgaccca
1261 tcaaaagatt tgatagctga aatacagaaa cagggtgatg ac
//
last modified: Tue May 31 10:56 2022