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LOCUS	    JX460054		    1302 bp    RNA     linear	VRL 23-JUN-2013
DEFINITION  HIV-1 isolate HIVST-003827 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   JX460054
VERSION     JX460054.1 GI:508096511
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
  TITLE     Large-Scale Analysis of the Prevalence and Geographic Distribution
	    of HIV-1 Non-B Variants in the United States.
  JOURNAL   J. Clin. Microbiol.. 51(8); 2662-9 (2013)
  PUBMED    23761148
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2012) ARUP Institute for Clinical and
	    Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
	    Lake City, UT 84108, USA
COMMENT     ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
	    Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="HIVST-003827"
		     /isolation_source="male, 2 years"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA: Indiana"
		     /collection_date="2008"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGN04421.1"
		     /db_xref="GI:508096512"
		     /translation="PQITLWQRPLVTIRVGGQIKEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIT
		     SIETVPVKLKPGMDGPKVKHWPLTEEKIKALKEICEEMEKEGKITKIGPENPYNTPIF
		     AIRKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPXIFQASMTKILEPFRAQNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELRNHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQMCKLLRGTKALTDIV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGDD"
BASE COUNT	516 a	 211 c	  277 g    294 t      4 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtcacaataa gagtaggggg ccagataaag 
      61 gaggctctct tagacacagg agcagatgat acagtattag aagacataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggca cagtattggt agggcctacg 
     241 ccygtcaaca taattggaag gaatatgttg actcagcttg ggtgcacgtt aaattttcca 
     301 attacttcca ttgaaacagt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aagcattggc cattgacaga agaaaaaata aaagcattaa aagaaatttg tgaagaaatg 
     421 gagaaggaag gaaaaatcac aaaaattggg cctgaaaatc catataacac tccaatattt 
     481 gccataagaa agaaggatag tactaagtgg agaaaattag tagatttcag ggaacttaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac ctcacccagc aggattaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt tcctttagat 
     661 aaagacttca ggaaatatac tgcatttacc atacctagtg taaayaatga aacaccagga 
     721 attagatatc aatataatgt actcccmcaa ggatggaaag gatcaccakc aatattccag 
     781 gctagcatga caaaaatctt agagcccttt agggcacaaa atccagaaat agtcatctat 
     841 caatatatgg atgacttata tgtaggatct gacctggaaa taggacaaca tagagcaaaa 
     901 atagaggagt taagaaacca tctattaaag tggggattta ccacaccaga caagaaacat 
     961 cagaaagaac ccccatttct ttggatggga tatgaactcc atcctgacaa atggacagtg 
    1021 cagcctatac agctgccaga aaaggagagc tggactgtca atgatataca aaagttagtg 
    1081 gggaaattaa actgggcaag tcagatttac ccaggaatta aggtaaagca aatgtgtaaa 
    1141 cttcttaggg ggaccaaagc actaacagac atagtaccac taactgaaga agcagaatta 
    1201 gaattagcag agaacaggga aattctaaaa gaaccagtac atggagtata ttatgaccca 
    1261 tcaaaagatt tgatagctga aatacagaaa cagggtgatg ac
//
last modified: Tue May 31 10:56 2022


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