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LOCUS JX460023 1302 bp RNA linear VRL 23-JUN-2013
DEFINITION HIV-1 isolate HIVST-002757 from USA pol protein (pol) gene, partial
cds
ACCESSION JX460023
VERSION JX460023.1 GI:508096449
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
TITLE Large-Scale Analysis of the Prevalence and Geographic Distribution
of HIV-1 Non-B Variants in the United States.
JOURNAL J. Clin. Microbiol.. 51(8); 2662-9 (2013)
PUBMED 23761148
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2012) ARUP Institute for Clinical and
Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
Lake City, UT 84108, USA
COMMENT ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="HIVST-002757"
/isolation_source="male, 41 years"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA: Massachusetts"
/collection_date="2007"
/note="subtype: CRF02_AG"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGN04390.1"
/db_xref="GI:508096450"
/translation="PQITLWQRPLVXVRXXGQLIEALLDTGADDTVLEEINLAGKWKP
KMIGGIGGFIKVRQYDQIXIEICGKKAIGTVLVGPTPVNIIGRNXLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISXIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDXBFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAXFQASMTKILEPFRTXNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTXIV
TLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQD"
BASE COUNT 508 a 203 c 270 g 290 t 31 other
ORIGIN
1 cctcaaatca ctctttggca acgaccctta gtyrcagtaa gartagrggg acagttaata
61 gaagcyctat tagacacagg rgcagatgat acagtattag aagaaataaa tttagcagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgac
181 cagatammta tagaaatttg tggaaaaaag gccataggta cagtattagt aggacctaca
241 cctgtcaaca taattggacg aaacatrttg actcagattg gttgtacyyt aaattttccm
301 attagtccta ttgaaacagt gccagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aarcaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagaratg
421 gaaaaggaag gaaaaatttc aaraattggg cctgaaaatc catacaatac tccaatattt
481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactyaat
541 aagagaactc aagacttctg ggaggtccaa ttaggaatac ctcatccygc aggattaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt gccyttagat
661 rtaracttta gaaagtatac tgcattcact atacctagtg taaataatga gacaccaggg
721 attagatatc agtacaatgt gcttccdcag ggatggaaag gatcaccagc mrtatttcag
781 gcaagcatga caaaaatctt agagcccttt agaacyarca atccagagat agtratttac
841 caatatatgg atgatttata tgtaggatct gacttagaga taggrcagca tagagcaaaa
901 atagaggagt taagagaaca tctactgaga tggggattta ccacaccaga caaaaaacat
961 cagaaagaac cyccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc
1021 cagcctatac agctgcctga aaaagaaagc tggactgtca atgatataca gaaattagtg
1081 ggaaaactaa attgggcaag tcagatttat gcaggaatta aagtaaggca actgtgtaaa
1141 ctcctcaggg gagccaaagc actaacagaw atagtaacac tgactgagga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gaacctgtcc atggrgtata ytatgaccca
1261 acaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022