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LOCUS	    JX460023		    1302 bp    RNA     linear	VRL 23-JUN-2013
DEFINITION  HIV-1 isolate HIVST-002757 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   JX460023
VERSION     JX460023.1 GI:508096449
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
  TITLE     Large-Scale Analysis of the Prevalence and Geographic Distribution
	    of HIV-1 Non-B Variants in the United States.
  JOURNAL   J. Clin. Microbiol.. 51(8); 2662-9 (2013)
  PUBMED    23761148
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2012) ARUP Institute for Clinical and
	    Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
	    Lake City, UT 84108, USA
COMMENT     ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
	    Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="HIVST-002757"
		     /isolation_source="male, 41 years"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA: Massachusetts"
		     /collection_date="2007"
		     /note="subtype: CRF02_AG"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGN04390.1"
		     /db_xref="GI:508096450"
		     /translation="PQITLWQRPLVXVRXXGQLIEALLDTGADDTVLEEINLAGKWKP
		     KMIGGIGGFIKVRQYDQIXIEICGKKAIGTVLVGPTPVNIIGRNXLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISXIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDXBFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAXFQASMTKILEPFRTXNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTXIV
		     TLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQD"
BASE COUNT	508 a	 203 c	  270 g    290 t     31 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccctta gtyrcagtaa gartagrggg acagttaata 
      61 gaagcyctat tagacacagg rgcagatgat acagtattag aagaaataaa tttagcagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgac 
     181 cagatammta tagaaatttg tggaaaaaag gccataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggacg aaacatrttg actcagattg gttgtacyyt aaattttccm 
     301 attagtccta ttgaaacagt gccagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aarcaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagaratg 
     421 gaaaaggaag gaaaaatttc aaraattggg cctgaaaatc catacaatac tccaatattt 
     481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactyaat 
     541 aagagaactc aagacttctg ggaggtccaa ttaggaatac ctcatccygc aggattaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt gccyttagat 
     661 rtaracttta gaaagtatac tgcattcact atacctagtg taaataatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccdcag ggatggaaag gatcaccagc mrtatttcag 
     781 gcaagcatga caaaaatctt agagcccttt agaacyarca atccagagat agtratttac 
     841 caatatatgg atgatttata tgtaggatct gacttagaga taggrcagca tagagcaaaa 
     901 atagaggagt taagagaaca tctactgaga tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac cyccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagcctatac agctgcctga aaaagaaagc tggactgtca atgatataca gaaattagtg 
    1081 ggaaaactaa attgggcaag tcagatttat gcaggaatta aagtaaggca actgtgtaaa 
    1141 ctcctcaggg gagccaaagc actaacagaw atagtaacac tgactgagga agcagaatta 
    1201 gaattggcag agaacaggga aattctaaaa gaacctgtcc atggrgtata ytatgaccca 
    1261 acaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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