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LOCUS	    JX460020		    1302 bp    RNA     linear	VRL 23-JUN-2013
DEFINITION  HIV-1 isolate HIVST-002734 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   JX460020
VERSION     JX460020.1 GI:508096443
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
  TITLE     Large-Scale Analysis of the Prevalence and Geographic Distribution
	    of HIV-1 Non-B Variants in the United States.
  JOURNAL   J. Clin. Microbiol.. 51(8); 2662-9 (2013)
  PUBMED    23761148
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2012) ARUP Institute for Clinical and
	    Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
	    Lake City, UT 84108, USA
COMMENT     ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
	    Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="HIVST-002734"
		     /isolation_source="female, 41 years"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA: South Carolina"
		     /collection_date="2007"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGN04387.1"
		     /db_xref="GI:508096444"
		     /translation="PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVP
		     LDETFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPD
		     IVIYQYVDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDXWTVQPIQLPXKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLIRGTKALTDIV
		     PLTEEAELELAENREILKEPVHGXYYDPSKDLIAEXQKQGHD"
BASE COUNT	507 a	 213 c	  276 g    285 t     21 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gttacaataa aagtaggggg tcagctaaag 
      61 gaggctctct tagacacggg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggyttta tyaaagtaag acagtatgat 
     181 caaatactta tagaaatytg tggaaaaaag gctataggta cagtattagt gggacctaca 
     241 cctgtcaaca taattggcag aaatatgttg acccagcttg gatgtacact aaattttcca 
     301 attagyccca ttgaaactgt acctgttaaa ctaaagccag gaatggatgg cccaaaagtc 
     361 aaacaatggc cattracaga agagaaaata aaagcattaa cagcaatttg tgaggaaatg 
     421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtrttt 
     481 gcyataaaaa agaaggayag taccaaatgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaacaaat cagtaacagt actggatgtg ggggatgcat atttttcagt tcccttagat 
     661 gagaccttca ggaaatatac tgcattcacc atacccagta taaacaatga aacaccaggg 
     721 atyagatatc agtataatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agyagcatga craaaatytt agagcccttt agagcaaaaa ayccagatat agttatctat 
     841 caatatgtgg atgacttgta tgtaggatct gatttagaaa tagggcaaca tagaacaaaa 
     901 atagaggagt taagagaaca tctattgaag tggggattta ccacaccaga caagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa mtggacagta 
    1021 cagcctatac agctgccaga maaggatagc tggactgtca atgatataca aaagytagtg 
    1081 ggaaarttaa actgggcaag ccagatttac ccagggatta aagtaaggca attgtgtaaa 
    1141 ctcattaggg gaaccaaagc actaacagat atagtaccac tgactgaaga agcagaatta 
    1201 gaattggcag aaaacaggga aattctaaaa garccagtac atggagyata ytatgaccca 
    1261 tcaaaagact taatagctga artacagaaa caggggcatg ac
//
last modified: Tue May 31 10:56 2022


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