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LOCUS JX460020 1302 bp RNA linear VRL 23-JUN-2013
DEFINITION HIV-1 isolate HIVST-002734 from USA pol protein (pol) gene, partial
cds
ACCESSION JX460020
VERSION JX460020.1 GI:508096443
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
TITLE Large-Scale Analysis of the Prevalence and Geographic Distribution
of HIV-1 Non-B Variants in the United States.
JOURNAL J. Clin. Microbiol.. 51(8); 2662-9 (2013)
PUBMED 23761148
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2012) ARUP Institute for Clinical and
Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
Lake City, UT 84108, USA
COMMENT ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="HIVST-002734"
/isolation_source="female, 41 years"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA: South Carolina"
/collection_date="2007"
/note="subtype: C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGN04387.1"
/db_xref="GI:508096444"
/translation="PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVP
LDETFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPD
IVIYQYVDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDXWTVQPIQLPXKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLIRGTKALTDIV
PLTEEAELELAENREILKEPVHGXYYDPSKDLIAEXQKQGHD"
BASE COUNT 507 a 213 c 276 g 285 t 21 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gttacaataa aagtaggggg tcagctaaag
61 gaggctctct tagacacggg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggyttta tyaaagtaag acagtatgat
181 caaatactta tagaaatytg tggaaaaaag gctataggta cagtattagt gggacctaca
241 cctgtcaaca taattggcag aaatatgttg acccagcttg gatgtacact aaattttcca
301 attagyccca ttgaaactgt acctgttaaa ctaaagccag gaatggatgg cccaaaagtc
361 aaacaatggc cattracaga agagaaaata aaagcattaa cagcaatttg tgaggaaatg
421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtrttt
481 gcyataaaaa agaaggayag taccaaatgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaacaaat cagtaacagt actggatgtg ggggatgcat atttttcagt tcccttagat
661 gagaccttca ggaaatatac tgcattcacc atacccagta taaacaatga aacaccaggg
721 atyagatatc agtataatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agyagcatga craaaatytt agagcccttt agagcaaaaa ayccagatat agttatctat
841 caatatgtgg atgacttgta tgtaggatct gatttagaaa tagggcaaca tagaacaaaa
901 atagaggagt taagagaaca tctattgaag tggggattta ccacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa mtggacagta
1021 cagcctatac agctgccaga maaggatagc tggactgtca atgatataca aaagytagtg
1081 ggaaarttaa actgggcaag ccagatttac ccagggatta aagtaaggca attgtgtaaa
1141 ctcattaggg gaaccaaagc actaacagat atagtaccac tgactgaaga agcagaatta
1201 gaattggcag aaaacaggga aattctaaaa garccagtac atggagyata ytatgaccca
1261 tcaaaagact taatagctga artacagaaa caggggcatg ac
//
last modified: Tue May 31 10:56 2022