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LOCUS JX459996 1302 bp RNA linear VRL 23-JUN-2013
DEFINITION HIV-1 isolate HIVST-001612 from USA pol protein (pol) gene, partial
cds
ACCESSION JX459996
VERSION JX459996.1 GI:508096395
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
TITLE Large-Scale Analysis of the Prevalence and Geographic Distribution
of HIV-1 Non-B Variants in the United States.
JOURNAL J. Clin. Microbiol.. 51(8); 2662-9 (2013)
PUBMED 23761148
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2012) ARUP Institute for Clinical and
Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
Lake City, UT 84108, USA
COMMENT ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="HIVST-001612"
/isolation_source="female, 41 years"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA: New York"
/collection_date="2007"
/note="subtype: CRF02_AG"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGN04363.1"
/db_xref="GI:508096396"
/translation="PQITLWQRPLVTVRIEGQLIEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTXICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRAKNPE
MVIYQYXDDLYVGSDLEIGQHRAKIEELRDHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQHIELPDKDSWTVNDIQKLVGKLNWASQIYAGIRVKQLCKLLRGAKALTDXV
TLTEEAELELAENREILKEPVHGVYYDPTKDLVAEIQKQGQD"
BASE COUNT 513 a 201 c 274 g 299 t 15 other
ORIGIN
1 cctcaaatca ctctttggca acgaccctta gtcacagtaa gaatagaggg acagttaata
61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataaa tytaccagga
121 aaatggaaac caaaaatgat agggggaatt ggagggttta tyaaagtaag acaatatgat
181 cagatactta tagaaatttg tggaaaaagg gccataggta cagtattagt aggacctaca
241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca
301 attagtccta ttgaaactgt gccagtaaaa ttaaagccag gaatggatgg gccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagamatttg tacagaaatg
421 gaaaaggaag gaaagatttc aaaaattgga cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat
541 aagagaactc aagacttctg ggaggtccaa ttaggaattc ctcatcccgc rggattaaaa
601 aagaamaaat cagtaacagt actagatgtr ggggatgcat atttttcagt tcccttagat
661 gaagacttta gaaartatac tgcattcact atacctagtg taaataatga aacaccaggr
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatctccagc aatatttcag
781 gcaagcatga caaaaatctt agaacccttt agagcaaaaa atccagagat ggtaatttat
841 caatatrtrg atgatttata tgtagggtct gacttagaga tagggcagca tagagcaaaa
901 atagaggagt tgagagatca tctattgaga tggggattca ccacaccaga caaaaaacat
961 cagaaagaac ctccatttct ttggatggga tatgagctcc atcctgacaa atggacagtc
1021 cagcatatag agctgccaga taaagacagy tggactgtca atgatataca gaaattagtg
1081 ggaaaactaa attgggcaag tcaaatttat gcaggaatta gagtaaagca actgtgtaaa
1141 ctcctcaggg gagccaaagc actaacagat ryagtaacac tgactgagga agcagaatta
1201 gaattggcag araacaggga aattytaaaa gaacccgtac atggggtata ttatgaccca
1261 acaaaagact tagtagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022