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LOCUS	    JX459996		    1302 bp    RNA     linear	VRL 23-JUN-2013
DEFINITION  HIV-1 isolate HIVST-001612 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   JX459996
VERSION     JX459996.1 GI:508096395
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
  TITLE     Large-Scale Analysis of the Prevalence and Geographic Distribution
	    of HIV-1 Non-B Variants in the United States.
  JOURNAL   J. Clin. Microbiol.. 51(8); 2662-9 (2013)
  PUBMED    23761148
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2012) ARUP Institute for Clinical and
	    Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
	    Lake City, UT 84108, USA
COMMENT     ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
	    Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="HIVST-001612"
		     /isolation_source="female, 41 years"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA: New York"
		     /collection_date="2007"
		     /note="subtype: CRF02_AG"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGN04363.1"
		     /db_xref="GI:508096396"
		     /translation="PQITLWQRPLVTVRIEGQLIEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTXICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRAKNPE
		     MVIYQYXDDLYVGSDLEIGQHRAKIEELRDHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQHIELPDKDSWTVNDIQKLVGKLNWASQIYAGIRVKQLCKLLRGAKALTDXV
		     TLTEEAELELAENREILKEPVHGVYYDPTKDLVAEIQKQGQD"
BASE COUNT	513 a	 201 c	  274 g    299 t     15 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccctta gtcacagtaa gaatagaggg acagttaata 
      61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataaa tytaccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggagggttta tyaaagtaag acaatatgat 
     181 cagatactta tagaaatttg tggaaaaagg gccataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 attagtccta ttgaaactgt gccagtaaaa ttaaagccag gaatggatgg gccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagamatttg tacagaaatg 
     421 gaaaaggaag gaaagatttc aaaaattgga cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat 
     541 aagagaactc aagacttctg ggaggtccaa ttaggaattc ctcatcccgc rggattaaaa 
     601 aagaamaaat cagtaacagt actagatgtr ggggatgcat atttttcagt tcccttagat 
     661 gaagacttta gaaartatac tgcattcact atacctagtg taaataatga aacaccaggr 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatctccagc aatatttcag 
     781 gcaagcatga caaaaatctt agaacccttt agagcaaaaa atccagagat ggtaatttat 
     841 caatatrtrg atgatttata tgtagggtct gacttagaga tagggcagca tagagcaaaa 
     901 atagaggagt tgagagatca tctattgaga tggggattca ccacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct ttggatggga tatgagctcc atcctgacaa atggacagtc 
    1021 cagcatatag agctgccaga taaagacagy tggactgtca atgatataca gaaattagtg 
    1081 ggaaaactaa attgggcaag tcaaatttat gcaggaatta gagtaaagca actgtgtaaa 
    1141 ctcctcaggg gagccaaagc actaacagat ryagtaacac tgactgagga agcagaatta 
    1201 gaattggcag araacaggga aattytaaaa gaacccgtac atggggtata ttatgaccca 
    1261 acaaaagact tagtagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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