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LOCUS	    JX440948		     621 bp    RNA     linear	VRL 30-JAN-2013
DEFINITION  HIV-1 isolate CP_77 from USA nef protein gene, complete cds
ACCESSION   JX440948
VERSION     JX440948.1 GI:443900513
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 621)
            Show all sequences for reference 1
  AUTHORS   Mwimanzi,P., Markle,T.J., Martin,E., Ogata,Y., Kuang,X.T.,
	    Tokunaga,M., Mahiti,M., Pereyra,F., Miura,T., Walker,B.D.,
	    Brumme,Z.L., Brockman,M.A. and Ueno,T.
  TITLE     Attenuation of multiple Nef functions in HIV-1 elite controllers
  JOURNAL   Retrovirology 10 (1), 1 (2013)
  PUBMED    23289738
REFERENCE   2 (bases 1 to 621)
            Show all sequences for reference 2
  AUTHORS   Mwimanzi,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2012) Faculty of Health Sciences, Simon Fraser
	    University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Toyoda,M., Ogata,Y., Mahiti,M., Maeda,Y., Kuang,X.T., Miura,T.,
	    Jessen,H., Walker,B.D., Brockman,M.A., Brumme,Z.L. and Ueno,T.
  TITLE     Differential Ability of Primary HIV-1 Nef Isolates To Downregulate
	    HIV-1 Entry Receptors.
  JOURNAL   J. Virol.. 89(18); 9639-52 (2015)
  PUBMED    26178998
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. 9.2
	    Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..621
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CP_77"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
     CDS	     1..621
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AGD79212.1"
		     /db_xref="GI:443900514"
		     /translation="MGGKWSKSSVVGWPKIRERMKRAEPAADGVGPASRDLEKHGAIT
		     SSNTAATNADCAWLEAQEDEDVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLVY
		     SQKRQDILDLWVYHTQGFFPDWQNYTPGPGVRYPLTFGWCFKLVPVDPDKVEEANEGE
		     DNNLLHPMSLHGMDDPEKEVLIWKFDSTLAFHHRAREKHPEYYKNC"
BASE COUNT	196 a	 126 c	  171 g    128 t
ORIGIN
       1 atgggtggca aatggtcaaa aagtagtgtg gttggatggc ctaagataag agaaagaatg 
      61 aaacgagctg agccagcagc agatggggta ggaccagcat ctcgggacct ggaaaaacat 
     121 ggggcaatca caagtagcaa tacagcagct accaatgctg attgtgcctg gctggaagca 
     181 caagaggacg aggatgtggg ttttccagtc aggcctcagg tacctttaag accaatgact 
     241 tacaaggcag ctgtagatct tagccatttt ttaaaagaaa aggggggact ggaagggtta 
     301 gtttactccc agaaaaggca agatatcctt gatctgtggg tctaccacac acagggcttc 
     361 ttccctgatt ggcagaacta cacaccagga ccaggggtca gatatccact gacctttgga 
     421 tggtgcttca aactagtacc agttgatcca gataaggtag aagaggccaa tgaaggagag 
     481 gacaacaatt tgctacaccc tatgagcctg catgggatgg atgacccaga gaaagaagtg 
     541 ttaatatgga agtttgacag caccctggca tttcatcaca gagcccgaga gaaacatccg 
     601 gagtactaca agaactgctg a
//
last modified: Tue May 31 10:56 2022


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