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LOCUS	    JX440933		     633 bp    RNA     linear	VRL 30-JAN-2013
DEFINITION  HIV-1 isolate CP_30 from USA nef protein gene, complete cds
ACCESSION   JX440933
VERSION     JX440933.1 GI:443900483
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 633)
            Show all sequences for reference 1
  AUTHORS   Mwimanzi,P., Markle,T.J., Martin,E., Ogata,Y., Kuang,X.T.,
	    Tokunaga,M., Mahiti,M., Pereyra,F., Miura,T., Walker,B.D.,
	    Brumme,Z.L., Brockman,M.A. and Ueno,T.
  TITLE     Attenuation of multiple Nef functions in HIV-1 elite controllers
  JOURNAL   Retrovirology 10 (1), 1 (2013)
  PUBMED    23289738
REFERENCE   2 (bases 1 to 633)
            Show all sequences for reference 2
  AUTHORS   Mwimanzi,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2012) Faculty of Health Sciences, Simon Fraser
	    University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Toyoda,M., Ogata,Y., Mahiti,M., Maeda,Y., Kuang,X.T., Miura,T.,
	    Jessen,H., Walker,B.D., Brockman,M.A., Brumme,Z.L. and Ueno,T.
  TITLE     Differential Ability of Primary HIV-1 Nef Isolates To Downregulate
	    HIV-1 Entry Receptors.
  JOURNAL   J. Virol.. 89(18); 9639-52 (2015)
  PUBMED    26178998
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. 9.2
	    Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..633
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CP_30"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
     CDS	     1..633
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AGD79197.1"
		     /db_xref="GI:443900484"
		     /translation="MGNKWSKCVSGWPTVRERMRRAEPAAEPAAVGVGAVSRDLERHG
		     AITSSNTAATNADCAWLEAQEEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLE
		     GLIYSQRRQDILDLWVYNTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPEKVEEA
		     NEGENNSLLHPMSLHGMEDPEKEVLQWKFDSRLAFHHMAREKHPEYYKDC"
BASE COUNT	200 a	 126 c	  181 g    126 t
ORIGIN
       1 atgggtaata agtggtcaaa gtgtgtgagt ggatggccta ctgtaaggga aagaatgagg 
      61 cgagctgagc cagcagctga gccagcagca gttggggtgg gagcagtatc tagagacctg 
     121 gaaagacatg gagcaatcac aagtagcaat acagcagcta ccaatgctga ttgtgcctgg 
     181 ctagaagcac aagaggagga ggaggaggtg ggttttccag tcagacctca ggtaccatta 
     241 agaccaatga cttacaaggc agcattagat cttagccact ttttaaaaga aaagggggga 
     301 ctggaagggc taatttactc ccaaagaaga caagatatcc ttgatctgtg ggtctacaac 
     361 acacaaggct acttccctga ttggcagaac tacacaccag ggccaggggt cagatatcca 
     421 ctgacctttg gatggtgctt caagctagta ccagttgagc cagagaaggt agaagaggcc 
     481 aatgaaggag agaacaacag tttgttacac cctatgagtc tgcatggaat ggaggaccca 
     541 gagaaagaag tgttacagtg gaagtttgac agccgcctag cattccatca catggcccga 
     601 gagaaacatc cggagtacta taaagactgc tga
//
last modified: Tue May 31 10:56 2022


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