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LOCUS JX440933 633 bp RNA linear VRL 30-JAN-2013
DEFINITION HIV-1 isolate CP_30 from USA nef protein gene, complete cds
ACCESSION JX440933
VERSION JX440933.1 GI:443900483
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 633)
Show all sequences for reference 1
AUTHORS Mwimanzi,P., Markle,T.J., Martin,E., Ogata,Y., Kuang,X.T.,
Tokunaga,M., Mahiti,M., Pereyra,F., Miura,T., Walker,B.D.,
Brumme,Z.L., Brockman,M.A. and Ueno,T.
TITLE Attenuation of multiple Nef functions in HIV-1 elite controllers
JOURNAL Retrovirology 10 (1), 1 (2013)
PUBMED 23289738
REFERENCE 2 (bases 1 to 633)
Show all sequences for reference 2
AUTHORS Mwimanzi,P.M.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2012) Faculty of Health Sciences, Simon Fraser
University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
REFERENCE 3
Show all sequences for reference 3
AUTHORS Toyoda,M., Ogata,Y., Mahiti,M., Maeda,Y., Kuang,X.T., Miura,T.,
Jessen,H., Walker,B.D., Brockman,M.A., Brumme,Z.L. and Ueno,T.
TITLE Differential Ability of Primary HIV-1 Nef Isolates To Downregulate
HIV-1 Entry Receptors.
JOURNAL J. Virol.. 89(18); 9639-52 (2015)
PUBMED 26178998
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 9.2
Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..633
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CP_30"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
CDS 1..633
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AGD79197.1"
/db_xref="GI:443900484"
/translation="MGNKWSKCVSGWPTVRERMRRAEPAAEPAAVGVGAVSRDLERHG
AITSSNTAATNADCAWLEAQEEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLE
GLIYSQRRQDILDLWVYNTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPEKVEEA
NEGENNSLLHPMSLHGMEDPEKEVLQWKFDSRLAFHHMAREKHPEYYKDC"
BASE COUNT 200 a 126 c 181 g 126 t
ORIGIN
1 atgggtaata agtggtcaaa gtgtgtgagt ggatggccta ctgtaaggga aagaatgagg
61 cgagctgagc cagcagctga gccagcagca gttggggtgg gagcagtatc tagagacctg
121 gaaagacatg gagcaatcac aagtagcaat acagcagcta ccaatgctga ttgtgcctgg
181 ctagaagcac aagaggagga ggaggaggtg ggttttccag tcagacctca ggtaccatta
241 agaccaatga cttacaaggc agcattagat cttagccact ttttaaaaga aaagggggga
301 ctggaagggc taatttactc ccaaagaaga caagatatcc ttgatctgtg ggtctacaac
361 acacaaggct acttccctga ttggcagaac tacacaccag ggccaggggt cagatatcca
421 ctgacctttg gatggtgctt caagctagta ccagttgagc cagagaaggt agaagaggcc
481 aatgaaggag agaacaacag tttgttacac cctatgagtc tgcatggaat ggaggaccca
541 gagaaagaag tgttacagtg gaagtttgac agccgcctag cattccatca catggcccga
601 gagaaacatc cggagtacta taaagactgc tga
//
last modified: Tue May 31 10:56 2022