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LOCUS JX392343 611 bp RNA linear VRL 15-JAN-2013
DEFINITION HIV-1 isolate Jiangsu_2005_05007JS from China gag protein (gag)
gene, partial cds
ACCESSION JX392343
VERSION JX392343.1 GI:403404838
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 611)
Show all sequences for reference 1
AUTHORS Meng,Z., Xin,R., Zhong,P., Zhang,C., Abubakar,Y.F., Li,J., Liu,W.,
Zhang,X. and Xu,J.
TITLE A New Migration Map of HIV-1 CRF07_BC in China: Analysis of
Sequences from 12 Provinces over a Decade
JOURNAL PLoS ONE 7 (12), E52373 (2012)
PUBMED 23300654
REFERENCE 2 (bases 1 to 611)
Show all sequences for reference 2
AUTHORS Meng,Z., Xin,R., Zhang,X., Wang,W., Xu,J. and Li,J.
TITLE Direct Submission
JOURNAL Submitted (17-JUL-2012) Scientific Research Department, Shanghai
Public Health Clinical Center, 2901 Caolang Road, Shanghai 201508,
China
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV-1 Database at Los Alamos (hiv-1.lanl.gov).;
##HIVDataBaseData-START## Patient code Jiangsu_2005_05007JS Sample
city Nanjing Culture method primary Sample tissue plasma Risk
factor IDU Patient health status asymptomatic
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..611
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Jiangsu_2005_05007JS"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="China"
/collection_date="2005"
/note="subtype: CRF07_BC"
gene <1..>611
/gene="gag"
CDS <1..>611
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AFR44640.1"
/db_xref="GI:403404839"
/translation="HLVWASRELERFALNPGLLETSEGCKQIIKQLQPALQTGTEELR
SLFNTVATLYCVHTGIDVRDTKEALDKLEEEQNKVQQTQQAKKADGKVSQNYPIVQNL
QGQMVHQPISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQA
AMQILKDTINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGT"
BASE COUNT 235 a 124 c 137 g 115 t
ORIGIN
1 acacctagta tgggcaagca gggagctgga aagatttgca cttaaccctg gccttttaga
61 gacatcagaa ggctgtaaac aaataataaa acaactacaa ccagctcttc agacaggaac
121 agaggaactt agatcattat tcaacacagt agcaactctc tattgtgtac atacagggat
181 agatgtaaga gacaccaaag aagccttaga caagctagag gaagaacaaa acaaagttca
241 gcaaacacag caggcaaaga aggctgacgg gaaggtcagt caaaattatc ctatagtgca
301 gaatcttcaa gggcaaatgg tacatcagcc catatcacct agaactttaa atgcatgggt
361 aaaagtggta gaagagaagg cttttagccc agaagtaata cccatgtttt cagcactatc
421 agaaggagcc accccacaag atttaaacac catgttaaac acagtggggg gacatcaagc
481 agccatgcaa atattaaaag ataccatcaa tgaagaggct gcagaatggg atagattaca
541 tccagtacat gcagggccta ttgcaccagg ccaaatgaga gaaccaaggg gaagtgacat
601 agcaggaaca a
//
last modified: Tue May 31 10:56 2022