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LOCUS	    JX392343		     611 bp    RNA     linear	VRL 15-JAN-2013
DEFINITION  HIV-1 isolate Jiangsu_2005_05007JS from China gag protein (gag)
	    gene, partial cds
ACCESSION   JX392343
VERSION     JX392343.1 GI:403404838
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 611)
            Show all sequences for reference 1
  AUTHORS   Meng,Z., Xin,R., Zhong,P., Zhang,C., Abubakar,Y.F., Li,J., Liu,W.,
	    Zhang,X. and Xu,J.
  TITLE     A New Migration Map of HIV-1 CRF07_BC in China: Analysis of
	    Sequences from 12 Provinces over a Decade
  JOURNAL   PLoS ONE 7 (12), E52373 (2012)
  PUBMED    23300654
REFERENCE   2 (bases 1 to 611)
            Show all sequences for reference 2
  AUTHORS   Meng,Z., Xin,R., Zhang,X., Wang,W., Xu,J. and Li,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2012) Scientific Research Department, Shanghai
	    Public Health Clinical Center, 2901 Caolang Road, Shanghai 201508,
	    China
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV-1 Database at Los Alamos (hiv-1.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code Jiangsu_2005_05007JS Sample
	    city Nanjing Culture method primary Sample tissue plasma Risk
	    factor IDU Patient health status asymptomatic
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..611
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="Jiangsu_2005_05007JS"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="China"
		     /collection_date="2005"
		     /note="subtype: CRF07_BC"
     gene	     <1..>611
		     /gene="gag"
     CDS	     <1..>611
		     /gene="gag"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AFR44640.1"
		     /db_xref="GI:403404839"
		     /translation="HLVWASRELERFALNPGLLETSEGCKQIIKQLQPALQTGTEELR
		     SLFNTVATLYCVHTGIDVRDTKEALDKLEEEQNKVQQTQQAKKADGKVSQNYPIVQNL
		     QGQMVHQPISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQA
		     AMQILKDTINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGT"
BASE COUNT	235 a	 124 c	  137 g    115 t
ORIGIN
       1 acacctagta tgggcaagca gggagctgga aagatttgca cttaaccctg gccttttaga 
      61 gacatcagaa ggctgtaaac aaataataaa acaactacaa ccagctcttc agacaggaac 
     121 agaggaactt agatcattat tcaacacagt agcaactctc tattgtgtac atacagggat 
     181 agatgtaaga gacaccaaag aagccttaga caagctagag gaagaacaaa acaaagttca 
     241 gcaaacacag caggcaaaga aggctgacgg gaaggtcagt caaaattatc ctatagtgca 
     301 gaatcttcaa gggcaaatgg tacatcagcc catatcacct agaactttaa atgcatgggt 
     361 aaaagtggta gaagagaagg cttttagccc agaagtaata cccatgtttt cagcactatc 
     421 agaaggagcc accccacaag atttaaacac catgttaaac acagtggggg gacatcaagc 
     481 agccatgcaa atattaaaag ataccatcaa tgaagaggct gcagaatggg atagattaca 
     541 tccagtacat gcagggccta ttgcaccagg ccaaatgaga gaaccaaggg gaagtgacat 
     601 agcaggaaca a
//
last modified: Tue May 31 10:56 2022


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