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LOCUS	    JX202852		    4359 bp    RNA     linear	VRL 16-JAN-2013
DEFINITION  HIV-1 isolate 0B191727_5_E18 from Uganda gag protein (gag) gene,
	    complete cds; and pol protein (pol) gene, partial cds
ACCESSION   JX202852
VERSION     JX202852.1 GI:441442503
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 4359)
            Show all sequences for reference 1
  AUTHORS   Baalwa,J., Wang,S., Parrish,N.F., Decker,J.M., Keele,B.F.,
	    Learn,G.H., Yue,L., Ruzagira,E., Ssemwanga,D., Kamali,A.,
	    Amornkul,P.N., Price,M.A., Kappes,J.C., Karita,E., Kaleebu,P.,
	    Sanders,E., Gilmour,J., Allen,S., Hunter,E., Montefiori,D.C.,
	    Haynes,B.F., Cormier,E., Hahn,B.H. and Shaw,G.M.
  TITLE     Molecular identification, cloning and characterization of
	    transmitted/founder HIV-1 subtype A, D and A/D infectious molecular
	    clones
  JOURNAL   Virology 436 (1), 33-48 (2013)
  PUBMED    23123038
REFERENCE   2 (bases 1 to 4359)
            Show all sequences for reference 2
  AUTHORS   Shaw,G., Baalwa,J., Wang,S., Parrish,N., Decker,J., Keele,B.,
	    Ruzagira,E., Ssemwanga,D., Kaleebu,P., Kamali,A., Kappes,J.,
	    Cormier,E., Gilmour,J., Fast,P. and Hahn,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2012) Medicine, University of Pennsylvania, 409
	    Johnson Pavilion 3610 Hamilton Walk, Philadelphia, PA 19104-6076,
	    USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV-1 Database at Los Alamos (hiv-1.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 0B191727 Patient sex Female
	    Fiebig stage IV Viral load 15200 Sample tissue Plasma Risk factor
	    Heterosexual ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..4359
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="0B191727_5_E18"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /collection_date="24-Jan-2007"
		     /note="IAVI-CHAVI; subtype: D"
     gene	     149..1648
		     /gene="gag"
     CDS	     149..1648
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AGC32135.1"
		     /db_xref="GI:441442504"
		     /translation="MGARASVLSGGQLDEWEKIRLRPGGSKKYKLKHIVWASRELERF
		     ALNPGLLETSGGCKQIMKQLQPAIQTGSEELKSLFNTVATLYCVHEKIKVADTKEALD
		     KIEEEQTKSKEKAQQAADTRNSSQVSQNYPIVQNMQGQMVHQALTPRTLNAWVKVIEE
		     KNFSPEVIPMFSALSEGATPTDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRTHPVH
		     AGPVAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMY
		     SPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILK
		     SLGPGATLEEMMTACQGVGGPGHKARVLAEAMSQLSGTNASVMMQRGNFKGPKRNIKC
		     FNCGKEGHTAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKFWPSHKGRPGNFLQ
		     SRPEPSAPPAEIFGFGEEMTLPQKQEQKDKETCPLASLKSLFGNDPSSQ"
     gene	     <1444..>4359
		     /gene="pol"
     CDS	     <1444..>4359
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGC32136.1"
		     /db_xref="GI:441442505"
		     /translation="FFREILAFPQGKARELPSEQTGAISSTSRDFRVWGGNDTPSETG
		     AKGQGDVSLSLPQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEINLPGKWKPRMI
		     GGIGGFIKVKQYEQIPVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIE
		     TVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPIFAIK
		     KKDSSKWRKLVDFRELNKRTQDLWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDK
		     DFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKKNPEVII
		     YQYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDK
		     WTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKCIRGTKALTEVVPLT
		     KEAELELEENREILKEPVHGVYYDPSKDLIAEIQKQGQDQWTYQIYQEQYKNLKTGKY
		     AKTRGTHTNDVKQLTEAVQKIAYECIVIWGKTPKFRLPIQKETWETWWTDYWQATWIP
		     EWEYVNTPPLVKLWYQLEKEPIIGVETFYVDGAANRETKLGKAGYVTDRGRQKVVSLT
		     DTTNQKTELQAINLALQDSGLEVNIITDSQYALGIIQAQPDKSESELVNQIIEQLIKK
		     EKVYLSWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHNNWRAMASDF
		     NLPPVVAKEIVASCDKCQLKGEALHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYI
		     EAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSNFTSNAVKAACWWAGIKQEFGIP
		     YNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFVHNFKRKGGIGGYSAGERI
		     IDIIASEIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSEIK
		     "
BASE COUNT     1688 a	 745 c	 1018 g    908 t
ORIGIN
       1 ccgaacaggg acttgaaagc gaaagtagaa ccagaggagc tctctcgacg caggactcgg 
      61 cttgctgaag cgcgcacagc aagaggcgag gggcagcgaa cggtgagtac gctgaaattt 
     121 ttgactagcg gaggctagaa ggagagagat gggtgcgaga gcgtcagtat taagcggggg 
     181 tcaattagat gagtgggaga aaattcggtt acggccaggg ggaagcaaaa aatataaact 
     241 aaaacatata gtatgggcaa gcagggagct agaacgattt gcacttaatc ctggcctatt 
     301 agaaacatca ggaggctgta aacaaataat gaaacagtta caaccagcta ttcagacagg 
     361 atcagaggag cttaaatcat tatttaatac agtggcaacc ctctattgtg tacatgaaaa 
     421 gataaaggta gcagacacca aggaagcttt agacaagata gaggaagaac aaaccaaaag 
     481 taaggaaaaa gcacagcaag cagctgacac aagaaacagc agccaggtca gccaaaatta 
     541 ccctatagtg caaaacatgc aggggcaaat ggtacaccag gccctaacac ctagaacttt 
     601 gaacgcgtgg gtaaaagtaa tagaggagaa gaatttcagc ccagaagtga tacccatgtt 
     661 ttcagcacta tcagaaggag ccaccccaac tgatttaaac accatgctaa acacagtggg 
     721 gggacatcaa gcagccatgc aaatgttaaa agagaccatc aatgaggaag ctgcagaatg 
     781 ggataggaca catccagtgc atgcaggacc tgttgcacca ggccaaatga gagaaccaag 
     841 gggaagtgat atagcaggaa ctactagtac ccttcaggaa caaatagcat ggatgacatc 
     901 taatccacct ataccagtag gagaaatcta taaaagatgg ataatcctag gattaaataa 
     961 aatagtaagg atgtatagcc ctgtcagcat tttggacata agacaaggac caaaggagcc 
    1021 ttttagagac tatgtagatc ggttctataa aactctaaga gccgagcaag cttcacaaga 
    1081 tgtaaaaaat tggatgactg aaaccttgtt ggtccaaaat gcgaacccag attgtaaaac 
    1141 tatcttaaaa tcattaggac caggggctac attagaagaa atgatgacag catgtcaagg 
    1201 agtgggggga cctggtcata aagcaagagt tttggctgag gcaatgagcc aactatcagg 
    1261 tacaaatgct tctgtaatga tgcagagagg caattttaag ggcccaaaga gaaacattaa 
    1321 gtgtttcaac tgtggcaaag aagggcacac agcaaaaaat tgcagggctc ctagaaaaag 
    1381 gggctgttgg aaatgtggaa aagaaggaca ccaaatgaaa gattgcactg aaagacaggc 
    1441 taatttttta gggaaatttt ggccttccca caagggaagg ccagggaact tccttcagag 
    1501 cagaccggag ccatcagctc caccagcaga gattttcggg tttggggagg aaatgacact 
    1561 ccctcagaaa caggagcaaa aggacaagga gacgtgtccc ttagcctccc tcaaatcact 
    1621 ctttggcaac gacccctcgt cacagtaaag atagggggac agctaaagga agctctatta 
    1681 gatacaggag cagatgatac agtgttagag gaaataaatt tgccaggaaa atggaaacca 
    1741 agaatgatag ggggaattgg aggttttatc aaagtaaaac agtatgagca aataccagta 
    1801 gaaatctgtg gacataaagc tataggtaca gtactagtag ggcctacacc tgtcaacata 
    1861 attggaagaa atttgttgac tcagattggt tgcactttaa attttccaat tagtcctatt 
    1921 gaaactgtac cagtgaaatt aaagccaggg atggatggcc caaaagttaa acaatggcca 
    1981 ttgacagaag aaaaaataaa agcactgaca gaaatttgta cagatatgga aaaggaagga 
    2041 aaaatttcaa gaattgggcc tgaaaatcca tacaatactc caatatttgc cataaagaaa 
    2101 aaagacagta gtaagtggag aaaattagta gacttcagag aacttaataa gaggactcaa 
    2161 gacctttggg aagttcaatt aggaatacca catcctgcag ggctaaaaaa gaaaaaatca 
    2221 gtaacagtac tggatgtggg tgatgcatat ttttcagtcc ccttagataa agactttaga 
    2281 aaatatactg cattcaccat acctagtata aacaatgaga caccaggaat tagatatcag 
    2341 tacaatgtgc ttccacaagg atggaaagga tcaccagcaa tattccaaag tagcatgaca 
    2401 aaaatcttag agccttttag aaagaaaaat ccagaagtga ttatctatca atacatggat 
    2461 gatttgtatg taggatctga cttagaaata gggcagcata gaacaaagat agaggaatta 
    2521 agggaacacc tattgaagtg gggattcacc acaccagaca aaaagcatca gaaagaacct 
    2581 ccatttcttt ggatgggtta tgaactccat cctgataaat ggacagtaca gcctataaaa 
    2641 ctgccagaaa aagaaagctg gactgtcaat gatatacaga agttagtggg aaaattaaat 
    2701 tgggcaagcc agatatatcc aggaattaaa gtaaaacaat tatgcaaatg catcagggga 
    2761 accaaagcat tgacagaagt agtaccactg acaaaagaag cagaattaga actggaagaa 
    2821 aacagggaaa ttctaaaaga accagtacat ggagtgtatt atgacccatc aaaagactta 
    2881 atagcagaaa tacagaaaca agggcaagat caatggacat atcaaattta tcaggaacag 
    2941 tataaaaacc taaaaacagg aaagtatgca aaaacgaggg gtacccacac taatgatgta 
    3001 aagcaattaa cagaggcagt gcaaaaaata gcctatgaat gcatagtaat atggggaaag 
    3061 actcctaaat ttaggctacc catacaaaag gaaacatggg aaacatggtg gacagattat 
    3121 tggcaggcca cctggattcc tgagtgggag tatgtcaata cccctccttt agttaaatta 
    3181 tggtaccagt tagagaagga acccataata ggagtagaaa ctttctatgt agatggagca 
    3241 gctaatagag agactaaact aggaaaagca ggatatgtta ctgacagagg aagacagaaa 
    3301 gttgtctctc taactgacac aacaaatcag aagactgaat tacaagccat taatctagct 
    3361 ttgcaggatt cgggattaga agtaaacata atcacagact cacaatatgc attaggaatc 
    3421 attcaagcac aacctgataa gagtgaatca gagttagtca atcaaataat agagcagtta 
    3481 ataaaaaagg aaaaggtcta cctatcatgg gtaccagcac acaaggggat tggaggaaat 
    3541 gaacaagtag ataaattagt cagtaatgga atcaggaaaa tactattctt ggatggaata 
    3601 gataaggcac aagaagaaca tgagaaatac cacaacaatt ggagagcaat ggctagtgat 
    3661 ttcaacctgc cccctgtggt agcaaaagaa atagtagcca gctgtgataa atgtcagcta 
    3721 aaaggagaag ccttgcatgg acaagtagac tgtagcccag gaatatggca attagattgt 
    3781 acacatttag aaggaaaagt tattctggta gcagtccatg tagccagtgg ctatatagaa 
    3841 gcagaagtta ttccagcaga aacagggcag gaaacagcat actttctctt gaaattagca 
    3901 ggaagatggc cagtaaaagt agtacataca gataatggca gcaatttcac cagcaatgca 
    3961 gtaaaggccg cctgttggtg ggcaggcatc aagcaggaat ttggaattcc ctacaatccc 
    4021 caaagtcaag gagtagtaga atccatgaac aaagaattaa agaaaattat tggacaagta 
    4081 agagatcaag ctgaacatct taagacagca gtacaaatgg cagtatttgt ccacaatttt 
    4141 aaaagaaaag gggggattgg ggggtacagt gcaggggaaa gaataataga cataatagca 
    4201 tcagaaatac aaactaagga attacaaaaa caaatcacga aaattcaaaa ttttcgggtt 
    4261 tattacaggg acagcagaga tccaatttgg aaaggaccag caaagcttct ttggaaaggt 
    4321 gaaggggcag tagtaataca agacaatagt gaaataaag
//
last modified: Tue May 31 10:56 2022


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