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LOCUS	    JX171236		     630 bp    RNA     linear	VRL 30-JAN-2013
DEFINITION  HIV-1 isolate EC_56 from USA nef protein gene, complete cds
ACCESSION   JX171236
VERSION     JX171236.1 GI:402170391
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 630)
            Show all sequences for reference 1
  AUTHORS   Mwimanzi,P., Markle,T.J., Martin,E., Ogata,Y., Kuang,X.T.,
	    Tokunaga,M., Mahiti,M., Pereyra,F., Miura,T., Walker,B.D.,
	    Brumme,Z.L., Brockman,M.A. and Ueno,T.
  TITLE     Attenuation of multiple Nef functions in HIV-1 elite controllers
  JOURNAL   Retrovirology 10 (1), 1 (2013)
  PUBMED    23289738
REFERENCE   2 (bases 1 to 630)
            Show all sequences for reference 2
  AUTHORS   Mwimanzi,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2012) Faculty of Health Sciences, Simon Fraser
	    University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Toyoda,M., Ogata,Y., Mahiti,M., Maeda,Y., Kuang,X.T., Miura,T.,
	    Jessen,H., Walker,B.D., Brockman,M.A., Brumme,Z.L. and Ueno,T.
  TITLE     Differential Ability of Primary HIV-1 Nef Isolates To Downregulate
	    HIV-1 Entry Receptors.
  JOURNAL   J. Virol.. 89(18); 9639-52 (2015)
  PUBMED    26178998
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. Version 9.2
	    Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..630
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="EC_56"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
     CDS	     1..630
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AFQ33002.1"
		     /db_xref="GI:402170392"
		     /translation="MGGKWSKRRAPGWDNIRERMRRAEPAAEPAAEGVGAASRDLEQH
		     GALTSSNTAGNNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGAFDLSFFLKEKGGLD
		     GLIYSQKRQDILDLWMYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVDPQKVEEA
		     NEGENSVLLHPMSQHGMDDPEKEVLIWKFDSRLALHHVARELHPEYYKN"
BASE COUNT	198 a	 135 c	  175 g    122 t
ORIGIN
       1 atgggtggca agtggtcaaa acgccgtgct cctgggtggg ataatataag ggaaagaatg 
      61 agacgagctg agccagcagc agaaccagca gcagaggggg taggagcagc ctctcgagac 
     121 ctagaacaac atggagcact cacaagtagc aatacagcag gaaacaatgc tgcttgtgcc 
     181 tggctagaag cacaagagga agaggaagtg ggttttccag tcagacccca ggtaccttta 
     241 agaccaatga cttacaaggg agctttcgat ttgagcttct ttttaaaaga aaagggggga 
     301 ctggatgggt taatttactc ccagaaaaga caagatatcc ttgacctgtg gatgtaccac 
     361 acacaaggct acttccctga ttggcagaat tacacaccag ggccagggat cagatacccc 
     421 ctgacctttg gatggtgctt caagctagta ccagtagatc cacagaaggt agaagaggcc 
     481 aatgaagggg agaacagtgt cttgttacac ccgatgagcc agcatggaat ggatgaccca 
     541 gaaaaagaag tgctaatatg gaaatttgac agccgcctag cattgcatca tgtggcccga 
     601 gagctgcatc cggagtacta caagaactga 
//
last modified: Tue May 31 10:56 2022


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