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LOCUS JX171236 630 bp RNA linear VRL 30-JAN-2013
DEFINITION HIV-1 isolate EC_56 from USA nef protein gene, complete cds
ACCESSION JX171236
VERSION JX171236.1 GI:402170391
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 630)
Show all sequences for reference 1
AUTHORS Mwimanzi,P., Markle,T.J., Martin,E., Ogata,Y., Kuang,X.T.,
Tokunaga,M., Mahiti,M., Pereyra,F., Miura,T., Walker,B.D.,
Brumme,Z.L., Brockman,M.A. and Ueno,T.
TITLE Attenuation of multiple Nef functions in HIV-1 elite controllers
JOURNAL Retrovirology 10 (1), 1 (2013)
PUBMED 23289738
REFERENCE 2 (bases 1 to 630)
Show all sequences for reference 2
AUTHORS Mwimanzi,P.M.
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2012) Faculty of Health Sciences, Simon Fraser
University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
REFERENCE 3
Show all sequences for reference 3
AUTHORS Toyoda,M., Ogata,Y., Mahiti,M., Maeda,Y., Kuang,X.T., Miura,T.,
Jessen,H., Walker,B.D., Brockman,M.A., Brumme,Z.L. and Ueno,T.
TITLE Differential Ability of Primary HIV-1 Nef Isolates To Downregulate
HIV-1 Entry Receptors.
JOURNAL J. Virol.. 89(18); 9639-52 (2015)
PUBMED 26178998
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. Version 9.2
Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..630
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="EC_56"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
CDS 1..630
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AFQ33002.1"
/db_xref="GI:402170392"
/translation="MGGKWSKRRAPGWDNIRERMRRAEPAAEPAAEGVGAASRDLEQH
GALTSSNTAGNNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGAFDLSFFLKEKGGLD
GLIYSQKRQDILDLWMYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVDPQKVEEA
NEGENSVLLHPMSQHGMDDPEKEVLIWKFDSRLALHHVARELHPEYYKN"
BASE COUNT 198 a 135 c 175 g 122 t
ORIGIN
1 atgggtggca agtggtcaaa acgccgtgct cctgggtggg ataatataag ggaaagaatg
61 agacgagctg agccagcagc agaaccagca gcagaggggg taggagcagc ctctcgagac
121 ctagaacaac atggagcact cacaagtagc aatacagcag gaaacaatgc tgcttgtgcc
181 tggctagaag cacaagagga agaggaagtg ggttttccag tcagacccca ggtaccttta
241 agaccaatga cttacaaggg agctttcgat ttgagcttct ttttaaaaga aaagggggga
301 ctggatgggt taatttactc ccagaaaaga caagatatcc ttgacctgtg gatgtaccac
361 acacaaggct acttccctga ttggcagaat tacacaccag ggccagggat cagatacccc
421 ctgacctttg gatggtgctt caagctagta ccagtagatc cacagaaggt agaagaggcc
481 aatgaagggg agaacagtgt cttgttacac ccgatgagcc agcatggaat ggatgaccca
541 gaaaaagaag tgctaatatg gaaatttgac agccgcctag cattgcatca tgtggcccga
601 gagctgcatc cggagtacta caagaactga
//
last modified: Tue May 31 10:56 2022