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LOCUS	    JX160196		    1497 bp    DNA     linear	VRL 05-AUG-2012
DEFINITION  HIV-1 isolate 11195 from USA pol protein (pol) gene, partial cds;
	    and nonfunctional gag protein (gag) gene, partial sequence
ACCESSION   JX160196
VERSION     JX160196.1 GI:398660579
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1497)
            Show all sequences for reference 1
  AUTHORS   Dennis,A.M., Hue,S., Hurt,C.B., Napravnik,S., Sebastian,J.,
	    Pillay,D. and Eron,J.J.
  TITLE     Phylogenetic insights into regional HIV transmission.
  JOURNAL   AIDS. 26(14); 1813-22 (2012)
  PUBMED    22739398
REFERENCE   2 (bases 1 to 1497)
            Show all sequences for reference 2
  AUTHORS   Dennis,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2012) Medicine, University of North Carolina, 130
	    Mason Farm Road, Chapel Hill, NC 27599, USA
FEATURES             Location/Qualifiers
     source	     1..1497
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="11195"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2006"
		     /note="subtype: B"
     gene	     <1..>1497
		     /gene="pol"
     CDS	     <1..>1497
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFP14424.1"
		     /db_xref="GI:398660580"
		     /translation="PQITLWQRPLVTIKXGGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVKQYDQIPIDICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKEFRKYTAFTIPSVNNETPGVRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPE
		     IVIYQYXDDLYVGSDLEIGQHRTKIEELRQHLLRWGFXTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVI
		     PLTEEAELELAENREILKEPVHGVYYDPSXDLIAEIQKQGQGQWSYQIYQXPFKNLKT
		     GKYAXMRSAHTNDVKQLTEVVQKIALESIVIWGKTPKFRLPIQKETWEA"
     gene	     <1..40
		     /gene="gag"
     misc_feature    <1..40
		     /gene="gag"
		     /note="nonfunctional gag protein due to mutation"
BASE COUNT	594 a	 238 c	  311 g    332 t     22 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccccta gtcacaataa agrtaggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 cagataccca tagacatctg tggacataaa gctataggta cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaatytgttg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcaytag tagaaatttg tacagagatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaargacag tactaaatgg agaaaattag tagatttcag ggaacttaat 
     541 aagagractc aagacttctg ggaagttcaa ttaggaatac cacatccygc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagaattca gaaagtatac tgcatttact atacctagtg taaataatga aacaccaggg 
     721 gttagatatc agtayaatgt gctgccacag ggatggaaag gatcaccagc aatattccaa 
     781 gccagcatga caaagatctt agagcctttt agaaaacaaa atccagaaat agttatctat 
     841 caatacrtgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacaaca tctgttgagg tggggatttr ccacaccaga caaaaaacat 
     961 cagaaagaac ctcccttcct ttggatgggw tatgaactcc atcctgataa atggacagta 
    1021 cagcccataa arctgccaga aaargatagc tggactgtca atgayataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttat gcaggratta aagtaaagca aytatgtaaa 
    1141 ctccttaggg gagccaaagc actaacagaa gtaataccac taacagaaga agcagagcta 
    1201 gaactggcag aaaacaggga aattctaaaa gaaccagtrc atggagtata ttatgatcca 
    1261 tcaaragacy taatagctga aatacagaag caggggcaag gccaatggtc atatcagatt 
    1321 tatcaagasc catttaaaaa tctgaaaaca ggaaagtatg caaraatgag gagtgcccac 
    1381 actaatgatg taaaacagtt aacagaggta gtgcaaaaaa tagccctaga aagyatagtg 
    1441 atatggggaa aaactcctaa atttagactr cccatacaaa aagaaacatg ggaagca
//
last modified: Tue May 31 10:56 2022


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