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LOCUS JX160196 1497 bp DNA linear VRL 05-AUG-2012
DEFINITION HIV-1 isolate 11195 from USA pol protein (pol) gene, partial cds;
and nonfunctional gag protein (gag) gene, partial sequence
ACCESSION JX160196
VERSION JX160196.1 GI:398660579
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Dennis,A.M., Hue,S., Hurt,C.B., Napravnik,S., Sebastian,J.,
Pillay,D. and Eron,J.J.
TITLE Phylogenetic insights into regional HIV transmission.
JOURNAL AIDS. 26(14); 1813-22 (2012)
PUBMED 22739398
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Dennis,A.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2012) Medicine, University of North Carolina, 130
Mason Farm Road, Chapel Hill, NC 27599, USA
FEATURES Location/Qualifiers
source 1..1497
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="11195"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2006"
/note="subtype: B"
gene <1..>1497
/gene="pol"
CDS <1..>1497
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFP14424.1"
/db_xref="GI:398660580"
/translation="PQITLWQRPLVTIKXGGQLKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVKQYDQIPIDICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKEFRKYTAFTIPSVNNETPGVRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPE
IVIYQYXDDLYVGSDLEIGQHRTKIEELRQHLLRWGFXTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVI
PLTEEAELELAENREILKEPVHGVYYDPSXDLIAEIQKQGQGQWSYQIYQXPFKNLKT
GKYAXMRSAHTNDVKQLTEVVQKIALESIVIWGKTPKFRLPIQKETWEA"
gene <1..40
/gene="gag"
misc_feature <1..40
/gene="gag"
/note="nonfunctional gag protein due to mutation"
BASE COUNT 594 a 238 c 311 g 332 t 22 other
ORIGIN
1 cctcaaatca ctctttggca acgaccccta gtcacaataa agrtaggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat
181 cagataccca tagacatctg tggacataaa gctataggta cagtattaat aggacctaca
241 cctgtcaaca taattggaag aaatytgttg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcaytag tagaaatttg tacagagatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaargacag tactaaatgg agaaaattag tagatttcag ggaacttaat
541 aagagractc aagacttctg ggaagttcaa ttaggaatac cacatccygc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagaattca gaaagtatac tgcatttact atacctagtg taaataatga aacaccaggg
721 gttagatatc agtayaatgt gctgccacag ggatggaaag gatcaccagc aatattccaa
781 gccagcatga caaagatctt agagcctttt agaaaacaaa atccagaaat agttatctat
841 caatacrtgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagacaaca tctgttgagg tggggatttr ccacaccaga caaaaaacat
961 cagaaagaac ctcccttcct ttggatgggw tatgaactcc atcctgataa atggacagta
1021 cagcccataa arctgccaga aaargatagc tggactgtca atgayataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatttat gcaggratta aagtaaagca aytatgtaaa
1141 ctccttaggg gagccaaagc actaacagaa gtaataccac taacagaaga agcagagcta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtrc atggagtata ttatgatcca
1261 tcaaragacy taatagctga aatacagaag caggggcaag gccaatggtc atatcagatt
1321 tatcaagasc catttaaaaa tctgaaaaca ggaaagtatg caaraatgag gagtgcccac
1381 actaatgatg taaaacagtt aacagaggta gtgcaaaaaa tagccctaga aagyatagtg
1441 atatggggaa aaactcctaa atttagactr cccatacaaa aagaaacatg ggaagca
//
last modified: Tue May 31 10:56 2022