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LOCUS	    JX160187		    1497 bp    DNA     linear	VRL 05-AUG-2012
DEFINITION  HIV-1 isolate 11093 from USA pol protein (pol) and gag protein
	    (gag) genes, partial cds
ACCESSION   JX160187
VERSION     JX160187.1 GI:398660552
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1497)
            Show all sequences for reference 1
  AUTHORS   Dennis,A.M., Hue,S., Hurt,C.B., Napravnik,S., Sebastian,J.,
	    Pillay,D. and Eron,J.J.
  TITLE     Phylogenetic insights into regional HIV transmission.
  JOURNAL   AIDS. 26(14); 1813-22 (2012)
  PUBMED    22739398
REFERENCE   2 (bases 1 to 1497)
            Show all sequences for reference 2
  AUTHORS   Dennis,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2012) Medicine, University of North Carolina, 130
	    Mason Farm Road, Chapel Hill, NC 27599, USA
FEATURES             Location/Qualifiers
     source	     1..1497
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="11093"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="1999"
		     /note="subtype: B"
     gene	     <1..>1497
		     /gene="pol"
     CDS	     <1..>1497
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFP14407.1"
		     /db_xref="GI:398660554"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMCLPGRWKP
		     KMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDGTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIXLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTEVI
		     PLTEEAELELAENREILREPVHGVYYDPTKDLIAEVQKQGQGQWTYQIYQEPFKNLKT
		     GKYAKMRGAHTNDVRQLTEAVQKIATESVVIWGKTPKFKLPIXKETWXA"
     gene	     <1..40
		     /gene="gag"
     CDS	     <1..40
		     /gene="gag"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AFP14406.1"
		     /db_xref="GI:398660553"
		     /translation="LKSLFGSDPSSQ"
BASE COUNT	595 a	 246 c	  316 g    324 t     16 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctc gtcacaataa agataggagg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgtg tttaccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagatacttg tagaaatttg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc 
     301 ataagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagty 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa tagaaatctg tacagaaatg 
     421 gaaaaggaag graaaatttc aaaaattgga cctgaaaatc catacaatac tccagtgttt 
     481 gccataaaga aaaaagatgg tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaacyc aagacttytg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaraaat cggtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttca ggaagtacac ggcatttacc atacctagta taaataatga gacaccaggg 
     721 attaggtatg agtayaatgt gctcccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agtyatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggarc tgaggcaaca tcttctgaag tggggattta ccacaccaga caaaaagcat 
     961 caraaagaac ctccattcct ktggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag wgctaccaga aaaggacagc tggactgtca atgacataca gaarttagtg 
    1081 ggaaaattga attgggcaag tcagatctac ccagggatta aagtaaagca actatgtaaa 
    1141 ctccttaggg gagccaaagc actaacagaa gtaataccac taacagaaga agcagagctg 
    1201 gaactagcag agaacaggga gattctaaga garccagtac atggagtgta ttatgaccca 
    1261 acaaaagact taatagcaga agtacagaag cagggacaag gccaatggac atatcaaatt 
    1321 tatcaagagc catttaaaaa tctgaaaaca ggaaaatatg caaaaatgag gggtgcccac 
    1381 actaatgatg taagacaatt aacagaagca gtgcaaaaaa tagccacaga aagcgtagta 
    1441 atatggggaa agactcctaa atttaaacta cccatammca aagaaacatg ggamgca
//
last modified: Tue May 31 10:56 2022


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