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LOCUS JX160187 1497 bp DNA linear VRL 05-AUG-2012
DEFINITION HIV-1 isolate 11093 from USA pol protein (pol) and gag protein
(gag) genes, partial cds
ACCESSION JX160187
VERSION JX160187.1 GI:398660552
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Dennis,A.M., Hue,S., Hurt,C.B., Napravnik,S., Sebastian,J.,
Pillay,D. and Eron,J.J.
TITLE Phylogenetic insights into regional HIV transmission.
JOURNAL AIDS. 26(14); 1813-22 (2012)
PUBMED 22739398
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Dennis,A.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2012) Medicine, University of North Carolina, 130
Mason Farm Road, Chapel Hill, NC 27599, USA
FEATURES Location/Qualifiers
source 1..1497
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="11093"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="1999"
/note="subtype: B"
gene <1..>1497
/gene="pol"
CDS <1..>1497
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFP14407.1"
/db_xref="GI:398660554"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMCLPGRWKP
KMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDGTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIXLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTEVI
PLTEEAELELAENREILREPVHGVYYDPTKDLIAEVQKQGQGQWTYQIYQEPFKNLKT
GKYAKMRGAHTNDVRQLTEAVQKIATESVVIWGKTPKFKLPIXKETWXA"
gene <1..40
/gene="gag"
CDS <1..40
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AFP14406.1"
/db_xref="GI:398660553"
/translation="LKSLFGSDPSSQ"
BASE COUNT 595 a 246 c 316 g 324 t 16 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctc gtcacaataa agataggagg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgtg tttaccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagatacttg tagaaatttg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc
301 ataagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagty
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa tagaaatctg tacagaaatg
421 gaaaaggaag graaaatttc aaaaattgga cctgaaaatc catacaatac tccagtgttt
481 gccataaaga aaaaagatgg tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaacyc aagacttytg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaraaat cggtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttca ggaagtacac ggcatttacc atacctagta taaataatga gacaccaggg
721 attaggtatg agtayaatgt gctcccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agtyatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggarc tgaggcaaca tcttctgaag tggggattta ccacaccaga caaaaagcat
961 caraaagaac ctccattcct ktggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag wgctaccaga aaaggacagc tggactgtca atgacataca gaarttagtg
1081 ggaaaattga attgggcaag tcagatctac ccagggatta aagtaaagca actatgtaaa
1141 ctccttaggg gagccaaagc actaacagaa gtaataccac taacagaaga agcagagctg
1201 gaactagcag agaacaggga gattctaaga garccagtac atggagtgta ttatgaccca
1261 acaaaagact taatagcaga agtacagaag cagggacaag gccaatggac atatcaaatt
1321 tatcaagagc catttaaaaa tctgaaaaca ggaaaatatg caaaaatgag gggtgcccac
1381 actaatgatg taagacaatt aacagaagca gtgcaaaaaa tagccacaga aagcgtagta
1441 atatggggaa agactcctaa atttaaacta cccatammca aagaaacatg ggamgca
//
last modified: Tue May 31 10:56 2022