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LOCUS JX160177 1497 bp DNA linear VRL 05-AUG-2012
DEFINITION HIV-1 isolate 10978 from USA pol protein (pol) and gag protein
(gag) genes, partial cds
ACCESSION JX160177
VERSION JX160177.1 GI:398660523
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Dennis,A.M., Hue,S., Hurt,C.B., Napravnik,S., Sebastian,J.,
Pillay,D. and Eron,J.J.
TITLE Phylogenetic insights into regional HIV transmission.
JOURNAL AIDS. 26(14); 1813-22 (2012)
PUBMED 22739398
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Dennis,A.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2012) Medicine, University of North Carolina, 130
Mason Farm Road, Chapel Hill, NC 27599, USA
FEATURES Location/Qualifiers
source 1..1497
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="10978"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2006"
/note="subtype: B"
gene <1..>1497
/gene="pol"
CDS <1..>1497
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFP14388.1"
/db_xref="GI:398660525"
/translation="PQITLWQRPLVTVKIGGQLXEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLXGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPXNPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEBFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIEQHRAKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEXX
PLTKEAELELAENREILKEPVHGVYYDPSKELIAEIQKQENGQWTYQIYQEPFKNLKT
GKYARTRGAHTNDVRQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET"
gene <1..40
/gene="gag"
CDS <1..40
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AFP14387.1"
/db_xref="GI:398660524"
/translation="LKSLFGNDPSSQ"
BASE COUNT 595 a 244 c 302 g 329 t 27 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacagtaa agataggggg gcagctaarg
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccag tagaaatctg tggacataaa gctataggta cagtattart aggrcctaca
241 cctgtcaaca taattggaag aaatctgttg actcaaattg gttgcacttt aaattttccc
301 attagtccta ttgagactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agagaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag graaaatttc aaaaattggg cctgawaatc catataatac tccagtattt
481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttytg ggaagttcaa ttaggaatac cacatcccgc aggrttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcwt atttttcagt cccyttagat
661 gagracttca gaaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 actagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat
841 caatatatgg atgatttgta tgtaggatct gacttagaga tagaacagca tagagcaaaa
901 atagaggarc taagacaaca tctgttgagg tggggrttta ccacaccaga caaaaarcac
961 cagaaagaac cyccattyct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaggacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattra attgggcaag tcagatttac ccagggatca aagtraagca attatgtaaa
1141 ctccttaggg gaaccaaggc attaacagaa rtartaccac taacaaaaga agcagarcta
1201 gaactggcag aaaacaggga rattctaaaa gagccagtac atggagtrta ttatgaccca
1261 tcaaaagaat taatagcaga aatacagaag caggagaatg gccaatggac atatcaaatt
1321 tatcaagagc catttaaraa tctraaaaca ggaaaatatg caagaacrag aggtgcccac
1381 actaatgatg taagacaact aactgaggca gtgcaaaaaa taaccacaga aagcatagta
1441 atatggggaa aaactcctaa atttaaayta cccatacaaa argaaacatg ggaaaca
//
last modified: Tue May 31 10:56 2022