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LOCUS	    JX160177		    1497 bp    DNA     linear	VRL 05-AUG-2012
DEFINITION  HIV-1 isolate 10978 from USA pol protein (pol) and gag protein
	    (gag) genes, partial cds
ACCESSION   JX160177
VERSION     JX160177.1 GI:398660523
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1497)
            Show all sequences for reference 1
  AUTHORS   Dennis,A.M., Hue,S., Hurt,C.B., Napravnik,S., Sebastian,J.,
	    Pillay,D. and Eron,J.J.
  TITLE     Phylogenetic insights into regional HIV transmission.
  JOURNAL   AIDS. 26(14); 1813-22 (2012)
  PUBMED    22739398
REFERENCE   2 (bases 1 to 1497)
            Show all sequences for reference 2
  AUTHORS   Dennis,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2012) Medicine, University of North Carolina, 130
	    Mason Farm Road, Chapel Hill, NC 27599, USA
FEATURES             Location/Qualifiers
     source	     1..1497
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="10978"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2006"
		     /note="subtype: B"
     gene	     <1..>1497
		     /gene="pol"
     CDS	     <1..>1497
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFP14388.1"
		     /db_xref="GI:398660525"
		     /translation="PQITLWQRPLVTVKIGGQLXEALLDTGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLXGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPXNPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEBFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIEQHRAKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEXX
		     PLTKEAELELAENREILKEPVHGVYYDPSKELIAEIQKQENGQWTYQIYQEPFKNLKT
		     GKYARTRGAHTNDVRQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET"
     gene	     <1..40
		     /gene="gag"
     CDS	     <1..40
		     /gene="gag"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AFP14387.1"
		     /db_xref="GI:398660524"
		     /translation="LKSLFGNDPSSQ"
BASE COUNT	595 a	 244 c	  302 g    329 t     27 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacagtaa agataggggg gcagctaarg 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccag tagaaatctg tggacataaa gctataggta cagtattart aggrcctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcaaattg gttgcacttt aaattttccc 
     301 attagtccta ttgagactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag graaaatttc aaaaattggg cctgawaatc catataatac tccagtattt 
     481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttytg ggaagttcaa ttaggaatac cacatcccgc aggrttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcwt atttttcagt cccyttagat 
     661 gagracttca gaaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 actagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatatatgg atgatttgta tgtaggatct gacttagaga tagaacagca tagagcaaaa 
     901 atagaggarc taagacaaca tctgttgagg tggggrttta ccacaccaga caaaaarcac 
     961 cagaaagaac cyccattyct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaggacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattra attgggcaag tcagatttac ccagggatca aagtraagca attatgtaaa 
    1141 ctccttaggg gaaccaaggc attaacagaa rtartaccac taacaaaaga agcagarcta 
    1201 gaactggcag aaaacaggga rattctaaaa gagccagtac atggagtrta ttatgaccca 
    1261 tcaaaagaat taatagcaga aatacagaag caggagaatg gccaatggac atatcaaatt 
    1321 tatcaagagc catttaaraa tctraaaaca ggaaaatatg caagaacrag aggtgcccac 
    1381 actaatgatg taagacaact aactgaggca gtgcaaaaaa taaccacaga aagcatagta 
    1441 atatggggaa aaactcctaa atttaaayta cccatacaaa argaaacatg ggaaaca
//
last modified: Tue May 31 10:56 2022


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