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LOCUS JX160164 1497 bp DNA linear VRL 05-AUG-2012
DEFINITION HIV-1 isolate 10739 from USA pol protein (pol) and gag protein
(gag) genes, partial cds
ACCESSION JX160164
VERSION JX160164.1 GI:398660485
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Dennis,A.M., Hue,S., Hurt,C.B., Napravnik,S., Sebastian,J.,
Pillay,D. and Eron,J.J.
TITLE Phylogenetic insights into regional HIV transmission.
JOURNAL AIDS. 26(14); 1813-22 (2012)
PUBMED 22739398
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Dennis,A.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2012) Medicine, University of North Carolina, 130
Mason Farm Road, Chapel Hill, NC 27599, USA
FEATURES Location/Qualifiers
source 1..1497
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="10739"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2000"
/note="subtype: B"
gene <1..>1497
/gene="pol"
CDS <1..>1497
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFP14363.1"
/db_xref="GI:398660487"
/translation="PQITLWQRPLVTIKVXGQLKEALLDTGADDTVLEDMXLPGRWKP
KMIGGIGGFIKVRQYDQIAIEICGHKAIGTVLVGPTPINIIGRNLLTQIGCTLNFPIS
PIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFCEVQLGIPHPAGLKKKRSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPE
IVIYQYMDDLYVGSDLEIGQHRTKIXELRXHLLXWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLJRGTKALTEVV
PLTEEAQLELAENREILKEPVHGVYYDPTKXLIAELQKQGQGQWTYQIYQEPFKNLKT
GKYAXMRGAHTNDVKQLTEAVQKIAXESIXIWGKTPKFKLPIQKETWES"
gene <1..40
/gene="gag"
CDS <1..40
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AFP14362.1"
/db_xref="GI:398660486"
/translation="LKSLFGNDPSSQ"
BASE COUNT 606 a 244 c 298 g 327 t 22 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa aagtagrggg acaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagayatgga wttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagatagcca tagaaatatg tggacataaa gctataggta cagtgttagt aggacccaca
241 cctatcaaca taattggaag aaatctgttg actcaaattg gttgcacttt aaattttccc
301 attagtccta ttgacactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaraaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtrttt
481 gccataaaga aaaaagacag cactaaatgg agaaaattag tagacttcag agaacttaat
541 aaaagaactc aagatttctg tgaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaaagat cagtaacagt actrgatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 gctagcatga caaagatttt agaacctttt agaaaacaaa atccagaaat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagakgaat tragavmaca tctgttgrvr tggggattta ccacaccaga caaaaaacat
961 cagaaagagc ctccattcct ttggatgggt tatgaactcc atcctgacaa atggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattra attgggcaag tcagatttay gcagggatta aagtaaagca attatgtaaa
1141 ctcmttaggg gaaccaaagc actaacagaa gtagtaccac taacagaaga agcacagcta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca
1261 acaaaagamt taatagcaga actacaaaaa caagggcaag gccaatggac atatcaaatt
1321 tatcaagagc catttaaaaa cctgaaaaca ggaaaatatg caaraatgag gggagcccac
1381 acaaatgatg taaaacaatt aacagaggca gtgcaaaaaa tagccayrga aagyatarta
1441 atatggggaa agactcctaa atttaaacta cccatacaga aagaaacatg ggaatca
//
last modified: Tue May 31 10:56 2022