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LOCUS	    JX160164		    1497 bp    DNA     linear	VRL 05-AUG-2012
DEFINITION  HIV-1 isolate 10739 from USA pol protein (pol) and gag protein
	    (gag) genes, partial cds
ACCESSION   JX160164
VERSION     JX160164.1 GI:398660485
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1497)
            Show all sequences for reference 1
  AUTHORS   Dennis,A.M., Hue,S., Hurt,C.B., Napravnik,S., Sebastian,J.,
	    Pillay,D. and Eron,J.J.
  TITLE     Phylogenetic insights into regional HIV transmission.
  JOURNAL   AIDS. 26(14); 1813-22 (2012)
  PUBMED    22739398
REFERENCE   2 (bases 1 to 1497)
            Show all sequences for reference 2
  AUTHORS   Dennis,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2012) Medicine, University of North Carolina, 130
	    Mason Farm Road, Chapel Hill, NC 27599, USA
FEATURES             Location/Qualifiers
     source	     1..1497
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="10739"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2000"
		     /note="subtype: B"
     gene	     <1..>1497
		     /gene="pol"
     CDS	     <1..>1497
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFP14363.1"
		     /db_xref="GI:398660487"
		     /translation="PQITLWQRPLVTIKVXGQLKEALLDTGADDTVLEDMXLPGRWKP
		     KMIGGIGGFIKVRQYDQIAIEICGHKAIGTVLVGPTPINIIGRNLLTQIGCTLNFPIS
		     PIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFCEVQLGIPHPAGLKKKRSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPE
		     IVIYQYMDDLYVGSDLEIGQHRTKIXELRXHLLXWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLJRGTKALTEVV
		     PLTEEAQLELAENREILKEPVHGVYYDPTKXLIAELQKQGQGQWTYQIYQEPFKNLKT
		     GKYAXMRGAHTNDVKQLTEAVQKIAXESIXIWGKTPKFKLPIQKETWES"
     gene	     <1..40
		     /gene="gag"
     CDS	     <1..40
		     /gene="gag"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AFP14362.1"
		     /db_xref="GI:398660486"
		     /translation="LKSLFGNDPSSQ"
BASE COUNT	606 a	 244 c	  298 g    327 t     22 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa aagtagrggg acaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagayatgga wttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagatagcca tagaaatatg tggacataaa gctataggta cagtgttagt aggacccaca 
     241 cctatcaaca taattggaag aaatctgttg actcaaattg gttgcacttt aaattttccc 
     301 attagtccta ttgacactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaraaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtrttt 
     481 gccataaaga aaaaagacag cactaaatgg agaaaattag tagacttcag agaacttaat 
     541 aaaagaactc aagatttctg tgaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaagat cagtaacagt actrgatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 gctagcatga caaagatttt agaacctttt agaaaacaaa atccagaaat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagakgaat tragavmaca tctgttgrvr tggggattta ccacaccaga caaaaaacat 
     961 cagaaagagc ctccattcct ttggatgggt tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattra attgggcaag tcagatttay gcagggatta aagtaaagca attatgtaaa 
    1141 ctcmttaggg gaaccaaagc actaacagaa gtagtaccac taacagaaga agcacagcta 
    1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca 
    1261 acaaaagamt taatagcaga actacaaaaa caagggcaag gccaatggac atatcaaatt 
    1321 tatcaagagc catttaaaaa cctgaaaaca ggaaaatatg caaraatgag gggagcccac 
    1381 acaaatgatg taaaacaatt aacagaggca gtgcaaaaaa tagccayrga aagyatarta 
    1441 atatggggaa agactcctaa atttaaacta cccatacaga aagaaacatg ggaatca
//
last modified: Tue May 31 10:56 2022


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