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LOCUS JQ957662 554 bp RNA linear VRL 14-JUL-2012
DEFINITION HIV-1 isolate CH58d154.CA13 from USA envelope glycoprotein (env)
gene, partial cds
ACCESSION JQ957662
VERSION JQ957662.1 GI:389587112
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 554)
Show all sequences for reference 1
AUTHORS Bar,K.J., Tsao,C.Y., Iyer,S.S., Decker,J.M., Yang,Y.,
Bonsignori,M., Chen,X., Hwang,K.K., Montefiori,D.C., Liao,H.X.,
Hraber,P., Fischer,W., Li,H., Wang,S., Sterrett,S., Keele,B.F.,
Ganusov,V.V., Perelson,A.S., Korber,B.T., Georgiev,I.,
McLellan,J.S., Pavlicek,J.W., Gao,F., Haynes,B.F., Hahn,B.H.,
Kwong,P.D. and Shaw,G.M.
TITLE Early Low-Titer Neutralizing Antibodies Impede HIV-1 Replication
and Select for Virus Escape
JOURNAL PLoS Pathog. 8 (5), E1002721 (2012)
PUBMED 22693447
REFERENCE 2 (bases 1 to 554)
Show all sequences for reference 2
AUTHORS Bar,K.J., Tsao,C.-y., Iyer,S.S., Decker,J.M., Yang,Y.,
Bonsignori,M., Chen,X., Hwang,K.-K., Montefiori,D.C., Liao,H.-X.,
Hraber,P., Fischer,W., Li,H., Wang,S., Sterrett,S., Keele,B.F.,
Ganusov,V.V., Perelson,A.S., Korber,B.T., Georgiev,I.,
McLellan,J.S., Pavlicek,J.W., Gao,F., Haynes,B.F., Hahn,B.H.,
Kwong,P.D. and Shaw,G.M.
TITLE Direct Submission
JOURNAL Submitted (19-APR-2012) Department of Medicine, University of
Pennsylvania, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV-1 Database at Los Alamos (hiv.lanl.gov).;
##HIVDataBaseData-START## patient code 700010058 patient sex M
Sample city North Carolina HLA type A*0101 A*2301 B*1402 B*5701
Cw*0701 Cw*0802 Risk factor sex with male ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..554
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CH58d154.CA13"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="07-Jan-2007"
/note="subtype: B"
gene <1..>554
/gene="env"
CDS <1..>554
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFK88143.1"
/db_xref="GI:389587113"
/translation="SEGKEMKNCSFNIPTSMQDKTKKEYALFYKLDIVKIDDSNNSTN
NSTYRLISCNTSVVTQACPKVSFQPIPIHYCAPAGFAILKCNNKAFNGTGQCTNVSTV
QCTHGIRPVVSTQLLLNGSLAEKDIVLRSANFTNNAKTIIVQLNESVIINCTRPNNNT
RKSITIGPGRAFYATGDIIGDIRQA"
BASE COUNT 214 a 97 c 105 g 138 t
ORIGIN
1 agcgagggaa aggaaatgaa gaactgttct ttcaacatcc ccacaagcat gcaggataag
61 acgaagaaag aatatgcact cttttataaa cttgatatag taaaaataga tgatagtaat
121 aatagtacca ataatagtac ctataggttg ataagttgta acacctcagt cgttacacag
181 gcctgtccaa aggtatcttt tcagccaatt cctatacatt attgtgcccc ggctggtttt
241 gcgattctaa agtgtaataa taaggctttc aatggaacag gacaatgtac aaatgtcagc
301 acagtgcaat gcacacatgg aattaggcca gtagtatcaa ctcaactgct gttaaatggc
361 agtctagcag aaaaagatat agtacttagg tctgccaatt tcacaaacaa tgctaaaacc
421 ataatagtac agctgaatga atctgtaata attaattgta caagacccaa caacaataca
481 agaaaaagta taactatagg accagggaga gcattttatg caacaggaga tataatagga
541 gacataagac aagc
//
last modified: Tue May 31 10:56 2022