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LOCUS	    JQ957628		    2541 bp    RNA     linear	VRL 14-JUL-2012
DEFINITION  HIV-1 isolate CH40d412.D13 from USA envelope glycoprotein (env)
	    gene, complete cds; and vpu protein (vpu), rev protein (rev), and
	    tat protein (tat) genes, partial cds
ACCESSION   JQ957628
VERSION     JQ957628.1 GI:389586956
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2541)
            Show all sequences for reference 1
  AUTHORS   Bar,K.J., Tsao,C.Y., Iyer,S.S., Decker,J.M., Yang,Y.,
	    Bonsignori,M., Chen,X., Hwang,K.K., Montefiori,D.C., Liao,H.X.,
	    Hraber,P., Fischer,W., Li,H., Wang,S., Sterrett,S., Keele,B.F.,
	    Ganusov,V.V., Perelson,A.S., Korber,B.T., Georgiev,I.,
	    McLellan,J.S., Pavlicek,J.W., Gao,F., Haynes,B.F., Hahn,B.H.,
	    Kwong,P.D. and Shaw,G.M.
  TITLE     Early Low-Titer Neutralizing Antibodies Impede HIV-1 Replication
	    and Select for Virus Escape
  JOURNAL   PLoS Pathog. 8 (5), E1002721 (2012)
  PUBMED    22693447
REFERENCE   2 (bases 1 to 2541)
            Show all sequences for reference 2
  AUTHORS   Bar,K.J., Tsao,C.-y., Iyer,S.S., Decker,J.M., Yang,Y.,
	    Bonsignori,M., Chen,X., Hwang,K.-K., Montefiori,D.C., Liao,H.-X.,
	    Hraber,P., Fischer,W., Li,H., Wang,S., Sterrett,S., Keele,B.F.,
	    Ganusov,V.V., Perelson,A.S., Korber,B.T., Georgiev,I.,
	    McLellan,J.S., Pavlicek,J.W., Gao,F., Haynes,B.F., Hahn,B.H.,
	    Kwong,P.D. and Shaw,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-APR-2012) Department of Medicine, University of
	    Pennsylvania, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV-1 Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## patient code 700010040 patient sex M
	    Sample city North Carolina HLA type A*3101 A*0201 B*4402 B*4001
	    Cw*0302 Cw*0501 Risk factor sex with male ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2541
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CH40d412.D13"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="07-Aug-2007"
		     /note="subtype: B"
     gene	     1..2541
		     /gene="env"
     CDS	     1..2541
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFK88024.1"
		     /db_xref="GI:389586960"
		     /translation="MRVMGIRKNYQHLWREGILLLGILMICSAADNLWVTVYYGVPVW
		     REATTTLFCASDAKAYDTEAHNVWATHACVPTDPNPQEVELKNVTENFNMWENNMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGNVTTTTNSNGTLMEKGEVKNCSFKIT
		     TDIKDRTRKEYALFYKLDVVPINDTRYRLVSCNTSVITQACPKVSFEPIPIHYCAPAG
		     FAILKCNDKQFIGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFSDN
		     AKTIIVQLNKSVEITCTRPNNNTRKSIPMGPGKAFYARGDIIGDIRKASCKINGTEWH
		     STLKLVVEKLREQYNKTIVFNRSSGGDPEIVMYSFNCGGEFFYCNSTKLFNSTWPWND
		     TKGSHDTNDTLMLPCKIKQIINMWQGVGKAMYAPPIEGIIRCSSNITGLLLTRDGGYE
		     SNETDEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAFGLGAV
		     FLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQL
		     QARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNTSWSNKSLEQIWDNMTWMEWERE
		     IDNYTGYIYQLIEESQNQQEKNEQELLALDKWASLWNWFDITNWLWYIKIFIMIVGGL
		     IGLRIVFTVLSIVNRVRQGYSPLSFQTHLPAQRGPDRPEGIGEEGGERDRDRSDPLVN
		     GFLTLIWSDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEVLKYWWNLLQYWSQELK
		     NSAVSLLNATATAVAEGTDRVIEVVQRACRAILHIPRRIRQGLERALL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AFK88023.1"
		     /db_xref="GI:389586959"
		     /translation="ESDGDQEELSALVERGHLALGDINDL"
     gene	     <2125..2399
		     /gene="rev"
     CDS	     <2125..2399
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AFK88022.1"
		     /db_xref="GI:389586958"
		     /translation="PPPSPEGTRQARRNRRRRWRERQRQIRSISERILNTYLERSTEP
		     VPLQLPPLERLTLDCNENCGTSGTQGVGSPQILVESPTVLESGTKE"
     gene	     <2125..2215
		     /gene="tat"
     CDS	     <2125..2215
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AFK88021.1"
		     /db_xref="GI:389586957"
		     /translation="PTSQPRGDPTGPKESEKKVERETETDPIH"
BASE COUNT	877 a	 435 c	  605 g    624 t
ORIGIN
       1 atgagagtga tggggatcag gaagaattat cagcacttgt ggagagaggg catcttgctc 
      61 ttggggatat taatgatctg tagtgctgca gacaacttgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggagagaagc aaccactact ctattttgtg catcagatgc taaagcatat 
     181 gatacagagg cacataatgt ttgggccaca cacgcctgtg tacccacaga ccccaaccca 
     241 caagaagtag aattaaaaaa tgtgacagaa aattttaata tgtgggaaaa taacatggta 
     301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcttaaaacc atgtgtaaaa 
     361 ttaactccac tctgtgttac tttaaattgc actgatttag ggaatgttac tactaccact 
     421 aatagtaacg ggacattgat ggagaaggga gaagtaaaaa actgttcttt caagatcacc 
     481 acagacataa aagatagaac gcggaaggaa tatgcacttt tttataaact tgatgtagta 
     541 ccaataaatg ataccagata taggttagta agctgtaaca cctcagtcat tacacaggcc 
     601 tgtccaaagg tatcctttga gccaattcct atacattatt gtgccccggc tggttttgcg 
     661 attctaaagt gtaatgataa gcaattcatt ggaacaggac catgtacaaa tgtcagcaca 
     721 gtacaatgta cacatggaat taggccagta gtatcaactc aactgctgtt aaatggcagt 
     781 ttagcagaag aagaggtagt aattagatca gtcaatttca gtgacaatgc taaaacaata 
     841 atagtacaac tgaataaatc tgtagaaatt acttgcacaa gacccaacaa caatacaaga 
     901 aaaagtatac ccatgggacc agggaaagca ttttatgcaa gaggagacat aataggagac 
     961 ataagaaaag catcttgtaa aattaatgga acagaatggc atagcacttt aaaactggta 
    1021 gttgaaaaat taagagaaca atataataaa acaatagtct ttaatcgctc ctcaggaggg 
    1081 gacccagaaa ttgtaatgta cagtttcaat tgcggagggg aatttttcta ctgtaattca 
    1141 acaaagctgt ttaatagtac ttggccttgg aatgatacta aagggtcaca tgacactaat 
    1201 gacacactca tgctcccatg caaaataaaa caaattataa acatgtggca gggagtagga 
    1261 aaagcaatgt atgcccctcc catcgaagga ataattagat gctcatcaaa cattacagga 
    1321 ctgttattaa caagagatgg tggttacgag agcaatgaga ctgatgagat cttcagacct 
    1381 ggaggaggag atatgaggga caattggagg agtgaattat ataaatataa agtagtaaaa 
    1441 attgaaccat tgggagtagc acctaccaag gcaaagagga gagtggtgca gagggaaaaa 
    1501 agagcatttg gactaggagc tgtgttcctt gggttcttgg gagcagcagg aagcactatg 
    1561 ggcgcagcat caataacgct gacggtacag gccagacaat tattgtctgg tatagtgcaa 
    1621 cagcagaaca atttgctgag ggctattgag gcgcaacagc atctgttgca actcacagtc 
    1681 tggggcatta agcagctcca ggcaagagtc ctggctgtgg aaagatacct aaaggatcaa 
    1741 cagctcctgg ggatttgggg ttgctctgga aaactcatct gcaccactac tgtgccttgg 
    1801 aatactagtt ggagtaataa atctctggaa cagatttggg ataacatgac atggatggag 
    1861 tgggaaagag aaattgacaa ttatacaggc tacatatacc aattaattga agaatcgcag 
    1921 aaccaacaag aaaagaatga acaagaatta ttggcattgg ataaatgggc aagtttgtgg 
    1981 aattggtttg acataacaaa ctggctgtgg tatataaaaa tattcataat gatagtagga 
    2041 ggcttaatag gtttaagaat agtttttact gtactttcta tagtgaatag agttaggcag 
    2101 ggatactcac cattatcatt tcagacccac ctcccagccc agaggggacc cgacaggccc 
    2161 gaaggaatcg gagaagaagg tggagagaga gacagagaca gatccgatcc attagtgaac 
    2221 ggattcttaa cacttatctg gagcgatcta cggagcctgt gcctcttcag ctaccaccgc 
    2281 ttgagagact tactcttgat tgtaacgaga attgtggaac ttctgggacg cagggggtgg 
    2341 gaagtcctca aatattggtg gaatctccta cagtattgga gtcaggaact aaagaatagt 
    2401 gctgttagct tgctcaacgc cacagccaca gcagtagctg aggggacaga tagggttata 
    2461 gaagtagtac aaagagcttg tagagctatt ctccacatac ctagaagaat aagacagggc 
    2521 ttggaaaggg ctttgctata a
//
last modified: Tue May 31 10:56 2022


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