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LOCUS JQ898227 3018 bp DNA linear VRL 07-NOV-2012
DEFINITION Human immunodeficiency virus isolate 506 pol protein gene, partial
cds
ACCESSION JQ898227
VERSION JQ898227.1 GI:410585779
KEYWORDS .
SOURCE Human immunodeficiency virus
ORGANISM Human immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group; unclassified Primate lentivirus group
REFERENCE 1 (bases 1 to 3018)
Show all sequences for reference 1
AUTHORS Li,L., Chen,L., Yang,S., Li,T., Li,J., Liu,Y., Jia,L., Yang,B.,
Bao,Z., Li,H., Wang,X., Zhuang,D. and Liu,S.
TITLE Recombination Form and Epidemiology of HIV-1 Unique Recombinant
Strains Identified in Yunnan, China
JOURNAL PLoS ONE 7 (10), E46777 (2012)
PUBMED 23056447
REFERENCE 2 (bases 1 to 3018)
Show all sequences for reference 2
AUTHORS Li,L., Chen,L., Yang,S., Li,T., Li,J., Liu,Y., Yang,B., Bao,Z.,
Li,H., Wang,X., Zhuang,D. and Liu,S.
TITLE Direct Submission
JOURNAL Submitted (04-APR-2012) Department of AIDS Research, Beijing
Institute of Microbiology and Epidemiology, 20 Dongda Street,
Fengtai District, Beijing 100071, China
FEATURES Location/Qualifiers
source 1..3018
/organism="Human immunodeficiency virus"
/proviral="Human immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="506"
/host="Homo sapiens"
/db_xref="taxon:12721"
/country="China"
/collection_date="2009"
CDS <1..3018
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFV74171.1"
/db_xref="GI:410585780"
/translation="FFRENLALPQGKAREFSSEQTRANSPTTTSRELQVWGGDSNPIX
EAGADRQGALSFNLPQITLWQRPLVTIKIGGQLXEALLDTGADDTVLEEMNLPGKWKP
KMIGGIGGFIKVRQYEQIPIEICGXKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICDEMEKEGKIXKIGPDNPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSVNNATPGVRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEIV
PLTEEAELELAENREILKEPVHGAYYDPSKELIAEIQKQGQDQWTYQIYQEPFKNLKT
GKYARMRTAHTNDVRQLTEAVQKIAMESIVIWGKIPKFRLPIQKETWETWWTDYWQAT
WIPEWEFVNTPPLVKLWYQLEKDPIAGVETFYVDGAANRETKIGKAGYVTDRGRQKIV
SLTETTNQKTELQAIYIALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL
IXKERVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHERYHSNWRAMA
SDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVAS
GYMEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSNFTSAAVKAACWWADIQQEF
GIPYNPQSQGVVESMNKELKKIVGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAG
ERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNS
DIKVVPRRKAKIIKDYGKQMAGADCVAGRQDED"
BASE COUNT 1165 a 505 c 685 g 646 t 17 other
ORIGIN
1 ttttttaggg aaaatctggc cctcccacaa gggaaggcca gggaattttc ttcagagcag
61 accagagcca acagccccac caccaccagc agagagcttc aggtttgggg aggagacagc
121 aaccccatcy cagaagcagg agcagacaga caaggagctc tatcctttaa cctccctcag
181 atcactcttt ggcagcgacc cctcgtcaca ataaagatag gggggcaayt aaawgaagct
241 ctattagata caggagcaga tgatacagta ttagaagaaa tgaatttgcc agggaaatgg
301 aaaccaaaaa tgataggggg aattggaggt tttatcaaag taagacagta tgaacagata
361 cccatagaaa tytgtggasm caaagctata ggtacagtat tagtgggacc tacacctgtc
421 aacataattg gaagaaatct gttgactcaa cttggttgca ctttaaattt tccaatcagt
481 cccattgaaa ctgtaccagt aaaattaaag ccaggaatgg atggcccaaa ggttaaacaa
541 tggccattga cagaagagaa aataaaagca ttaacagaaa tttgtgatga aatggaraag
601 gaaggaaaaa ttwcaaaaat tgggcctgac aatccatata acactccaat atttgccata
661 aaaaagaagg acagtactaa gtggagaaaa ttagtagatt tcagggaact caataaaaga
721 actcaagatt tctgggaggt tcaattagga ataccacacc cagcagggtt raaaaagaaa
781 aaatcagtaa cagtcttgga tgtgggtgat gcatatttct cagttccttt agataaagac
841 ttcaggaagt atactgcatt taccatacct agtgtaaaca atgcgacacc aggggttaga
901 tatcagtaca atgtgctgcc acagggatgg aaaggatcac cagcaatatt ccaatgcagc
961 atgacaaaaa tyttagagcc ttttagaaaa caaaatccag acatagttat ctatcaatac
1021 atggatgact tgtatgtagg mtctgactta gaaatagggc arcatagagc aaaaatagag
1081 gaactgagag aacatctgtt aaagtggggr tttaccacac cagacaagaa acatcagaaa
1141 gaacctccat ttctttggat ggggtatgaa ctccatcctg acaaatggac agtacagcct
1201 atacagctgc cagaaaagga tagctggact gtcaatgata tacagaagtt agtgggaaaa
1261 ttaaactggg caagtcagat ttacccagga attaaagtaa agcaactctg taaactcctt
1321 agggggacca aagcactaac agaaatagta ccactaactg aagaagcaga attagaattg
1381 gcagaaaaca gggaaatttt aaaagagcca gtacatggag catattatga cccatcaaaa
1441 gaattgatag ctgaaataca gaaacaaggg caggaccaat ggacatatca aatttaccaa
1501 gaaccattta aaaatctgaa aacaggaaag tatgcaagaa tgaggactgc ccacactaat
1561 gatgtaagac agttaacaga ggctgtgcag aaaatagcca tggaaagcat agtaatatgg
1621 ggaaaaattc ctaaatttag attaccaaty caaaaagaaa catgggagac atggtggaca
1681 gactattggc aagccacctg gattcctgag tgggaatttg ttaatacccc tcccttagta
1741 aaattatggt accaaytgga gaaagacccc atagcaggag tagaaacttt ctatgtagat
1801 ggagcagcta atagggagac taaaatagga aaagcagggt atgtcactga caggggaaga
1861 cagaaaattg tttctctaac tgaaacaaca aatcagaaga ctgaattgca agcaatttat
1921 atagctttgc aagattcagg atcagaagta aacatagtaa cagattcaca gtatgcatta
1981 gggatcattc aagcacaacc agataagagt gaatcagagt tagtcaayca aataatagaa
2041 caattaatam agaaggaaag ggtctacctg tcatgggtac cagcacataa aggaattgga
2101 ggaaatgaac aagtagataa attagtaagt agtggaatca ggaaagtgct atttctagat
2161 ggaatagata aagctcaaga agaccatgaa aggtatcaca gcaattggag agcaatggct
2221 agtgacttta atctgccacc catagtagca aaagaaatag tggctagctg tgataaatgt
2281 cagttaaaag gagaagccat gcatggacaa gtagactgta gtccagggat atggcaatta
2341 gattgtacac acttagaagg aaaaatcatc ctggtagcag tccatgtagc cagtggctac
2401 atggaagcag aggttatccc agcagaaaca ggacaagaga cagcatactt tatactaaaa
2461 ttagcaggaa gatggccagt caaagtaata catacagaca atggtagtaa tttcaccagt
2521 gctgcagtta aggcagcctg ttggtgggca gatatccaac aggaatttgg aattccctac
2581 aatccccaaa gtcagggagt agtagaatcc atgaataaag aattaaagaa aattgtaggg
2641 caggtaagag atcaagctga gcaccttaag acagcagtac aaatggcagt attcattcac
2701 aattttaaga gaaaaggggg gattgggggg tacagtgcag gggaaagaat aatagatata
2761 atagcaacag acatacaaac taaagaatta caaaaacaaa ttacaaaaat tcaaaatttt
2821 cgggtttatt acagagacag cagagacccc atttggaaag gaccagccaa actactctgg
2881 aaaggtgaag gggcagtagt aatacaagat aatagtgaca taaaggtagt accaaggagg
2941 aaagcaaaaa tcattaagga ctatggaaaa cagatggcag gcgctgattg tgtggcaggt
3001 agacaggatg aagattag
//
last modified: Tue May 31 10:56 2022