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LOCUS JQ866016 232 bp RNA linear VRL 12-SEP-2012
DEFINITION Simian immunodeficiency virus isolate EP482 pol polyprotein (pol)
gene, partial cds
ACCESSION JQ866016
VERSION JQ866016.1 GI:392872160
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 232)
Show all sequences for reference 1
AUTHORS Li,Y., Ndjango,J.B., Learn,G.H., Ramirez,M.A., Keele,B.F.,
Bibollet-Ruche,F., Liu,W., Easlick,J.L., Decker,J.M.,
Rudicell,R.S., Inogwabini,B.I., Ahuka-Mundeke,S., Leendertz,F.H.,
Reynolds,V., Muller,M.N., Chancellor,R.L., Rundus,A.S., Simmons,N.,
Worobey,M., Shaw,G.M., Peeters,M., Sharp,P.M. and Hahn,B.H.
TITLE Eastern chimpanzees, but not bonobos, represent a simian
immunodeficiency virus reservoir
JOURNAL J. Virol. 86 (19), 10776-10791 (2012)
PUBMED 22837215
REFERENCE 2 (bases 1 to 232)
Show all sequences for reference 2
AUTHORS Li,Y., Ndjango,J.-B., Learn,G.H., Keele,B.F., Bibollet-Ruche,F.,
Easlick,J., Decker,J.M., Rudicell,R.S., Inogwabini,B.-I.,
Ahuka-Mundeke,S., Leendertz,F.H., Reynolds,V., Muller,M.N.,
Chancellor,R.L., Rundus,A.S., Simmonds,N., Worobey,M., Shaw,G.M.,
Peeters,M., Sharp,P.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2012) Dept. of Medicine, Perelman School of
Medicine, University of Pennsylvania, Johnson Pavilion 423, 3610
Hamilton Walk, Philadelphia, PA 19104, USA
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 4 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..232
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="EP482"
/isolation_source="feces"
/host="Pan troglodytes schweinfurthii"
/db_xref="taxon:11723"
/country="Democratic Republic of the Congo"
/collection_date="30-Jan-2006"
gene <1..>232
/gene="pol"
CDS <1..>232
/gene="pol"
/codon_start="2"
/transl_table="1"
/product="pol polyprotein"
/protein_id="AFM85350.1"
/db_xref="GI:392872161"
/translation="ESMNKQIKLIIEQIRDQAEHLRTAVVMAVHIHNFKRKGGIGGYT
PAQRILDILTTDIETTQLQKHITKNLQFRVYYR"
BASE COUNT 103 a 36 c 42 g 51 t
ORIGIN
1 ggaatccatg aataaacaaa taaaacttat catagaacaa attagagacc aagcagagca
61 tttaagaaca gcagtagtca tggcagtaca cattcataat tttaaaagaa aaggggggat
121 tggggggtac acacctgcac agagaatatt ggacatacta acaacagata tagagacaac
181 acaattacaa aaacacatta caaaaaattt acaatttcgg gtttattata gg
//
last modified: Tue May 31 10:56 2022