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LOCUS	    JQ866016		     232 bp    RNA     linear	VRL 12-SEP-2012
DEFINITION  Simian immunodeficiency virus isolate EP482 pol polyprotein (pol)
	    gene, partial cds
ACCESSION   JQ866016
VERSION     JQ866016.1 GI:392872160
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 232)
            Show all sequences for reference 1
  AUTHORS   Li,Y., Ndjango,J.B., Learn,G.H., Ramirez,M.A., Keele,B.F.,
	    Bibollet-Ruche,F., Liu,W., Easlick,J.L., Decker,J.M.,
	    Rudicell,R.S., Inogwabini,B.I., Ahuka-Mundeke,S., Leendertz,F.H.,
	    Reynolds,V., Muller,M.N., Chancellor,R.L., Rundus,A.S., Simmons,N.,
	    Worobey,M., Shaw,G.M., Peeters,M., Sharp,P.M. and Hahn,B.H.
  TITLE     Eastern chimpanzees, but not bonobos, represent a simian
	    immunodeficiency virus reservoir
  JOURNAL   J. Virol. 86 (19), 10776-10791 (2012)
  PUBMED    22837215
REFERENCE   2 (bases 1 to 232)
            Show all sequences for reference 2
  AUTHORS   Li,Y., Ndjango,J.-B., Learn,G.H., Keele,B.F., Bibollet-Ruche,F.,
	    Easlick,J., Decker,J.M., Rudicell,R.S., Inogwabini,B.-I.,
	    Ahuka-Mundeke,S., Leendertz,F.H., Reynolds,V., Muller,M.N.,
	    Chancellor,R.L., Rundus,A.S., Simmonds,N., Worobey,M., Shaw,G.M.,
	    Peeters,M., Sharp,P.M. and Hahn,B.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2012) Dept. of Medicine, Perelman School of
	    Medicine, University of Pennsylvania, Johnson Pavilion 423, 3610
	    Hamilton Walk, Philadelphia, PA 19104, USA
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. 4 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..232
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="EP482"
		     /isolation_source="feces"
		     /host="Pan troglodytes schweinfurthii"
		     /db_xref="taxon:11723"
		     /country="Democratic Republic of the Congo"
		     /collection_date="30-Jan-2006"
     gene	     <1..>232
		     /gene="pol"
     CDS	     <1..>232
		     /gene="pol"
		     /codon_start="2"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AFM85350.1"
		     /db_xref="GI:392872161"
		     /translation="ESMNKQIKLIIEQIRDQAEHLRTAVVMAVHIHNFKRKGGIGGYT
		     PAQRILDILTTDIETTQLQKHITKNLQFRVYYR"
BASE COUNT	103 a	  36 c	   42 g     51 t
ORIGIN
       1 ggaatccatg aataaacaaa taaaacttat catagaacaa attagagacc aagcagagca 
      61 tttaagaaca gcagtagtca tggcagtaca cattcataat tttaaaagaa aaggggggat 
     121 tggggggtac acacctgcac agagaatatt ggacatacta acaacagata tagagacaac 
     181 acaattacaa aaacacatta caaaaaattt acaatttcgg gtttattata gg
//
last modified: Tue May 31 10:56 2022


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