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LOCUS JQ866006 561 bp RNA linear VRL 12-SEP-2012
DEFINITION Simian immunodeficiency virus isolate OP3369 gag polyprotein (gag)
gene, partial cds
ACCESSION JQ866006
VERSION JQ866006.1 GI:392872142
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 561)
Show all sequences for reference 1
AUTHORS Li,Y., Ndjango,J.B., Learn,G.H., Ramirez,M.A., Keele,B.F.,
Bibollet-Ruche,F., Liu,W., Easlick,J.L., Decker,J.M.,
Rudicell,R.S., Inogwabini,B.I., Ahuka-Mundeke,S., Leendertz,F.H.,
Reynolds,V., Muller,M.N., Chancellor,R.L., Rundus,A.S., Simmons,N.,
Worobey,M., Shaw,G.M., Peeters,M., Sharp,P.M. and Hahn,B.H.
TITLE Eastern chimpanzees, but not bonobos, represent a simian
immunodeficiency virus reservoir
JOURNAL J. Virol. 86 (19), 10776-10791 (2012)
PUBMED 22837215
REFERENCE 2 (bases 1 to 561)
Show all sequences for reference 2
AUTHORS Li,Y., Ndjango,J.-B., Learn,G.H., Keele,B.F., Bibollet-Ruche,F.,
Easlick,J., Decker,J.M., Rudicell,R.S., Inogwabini,B.-I.,
Ahuka-Mundeke,S., Leendertz,F.H., Reynolds,V., Muller,M.N.,
Chancellor,R.L., Rundus,A.S., Simmonds,N., Worobey,M., Shaw,G.M.,
Peeters,M., Sharp,P.M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2012) Dept. of Medicine, Perelman School of
Medicine, University of Pennsylvania, Johnson Pavilion 423, 3610
Hamilton Walk, Philadelphia, PA 19104, USA
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 4 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..561
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="OP3369"
/isolation_source="feces"
/host="Pan troglodytes schweinfurthii"
/db_xref="taxon:11723"
/country="Democratic Republic of the Congo"
/collection_date="20-Apr-2011"
gene 1..>561
/gene="gag"
CDS 1..>561
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag polyprotein"
/protein_id="AFM85341.1"
/db_xref="GI:392872143"
/translation="MGARASVLRGEKLDTWESVRLRPGGKKKYLIKHLVWAGNQLERF
ALNPGLMETKEGCEKIITQLQPSVEIGSPEIVSLYNTICVLYCIHAGEKIKDTEEAVN
IVKMKGDKSESKNTSRTTATSSGEKQEQAATARAPPSGQRGLYPNIATGGNYPIITDA
QGIARHQPISPRTLNAWVRTVEEKSFS"
BASE COUNT 200 a 110 c 141 g 110 t
ORIGIN
1 atgggtgcga gagcgtcagt gttgagggga gaaaagcttg atacttggga aagtgtcagg
61 ctgcgtcccg gaggcaagaa aaaatatttg ataaaacatc tagtatgggc cggaaatcaa
121 ctagagcgct ttgcgctaaa ccccggcctc atggaaacaa aagagggttg cgaaaaaatc
181 atcacgcagt tgcaaccttc agtggagata gggtcacctg aaattgtctc cttgtacaat
241 actatttgtg tgctttattg catacacgca ggagaaaaaa ttaaagacac ggaagaagct
301 gtaaacatag tgaaaatgaa aggagacaaa agtgaaagca aaaatacaag tagaaccaca
361 gcgacatcta gtggtgaaaa gcaggaacag gcagcaactg ctcgagctcc ccctagcgga
421 cagagaggct tatatccaaa catagcaact ggtgggaatt atcccatcat aacagatgca
481 caagggatag ctagacacca gcctatctca ccaaggactc tgaatgcctg ggtaaggaca
541 gtagaagaaa aatcattcag t
//
last modified: Tue May 31 10:56 2022