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LOCUS	    JQ866006		     561 bp    RNA     linear	VRL 12-SEP-2012
DEFINITION  Simian immunodeficiency virus isolate OP3369 gag polyprotein (gag)
	    gene, partial cds
ACCESSION   JQ866006
VERSION     JQ866006.1 GI:392872142
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 561)
            Show all sequences for reference 1
  AUTHORS   Li,Y., Ndjango,J.B., Learn,G.H., Ramirez,M.A., Keele,B.F.,
	    Bibollet-Ruche,F., Liu,W., Easlick,J.L., Decker,J.M.,
	    Rudicell,R.S., Inogwabini,B.I., Ahuka-Mundeke,S., Leendertz,F.H.,
	    Reynolds,V., Muller,M.N., Chancellor,R.L., Rundus,A.S., Simmons,N.,
	    Worobey,M., Shaw,G.M., Peeters,M., Sharp,P.M. and Hahn,B.H.
  TITLE     Eastern chimpanzees, but not bonobos, represent a simian
	    immunodeficiency virus reservoir
  JOURNAL   J. Virol. 86 (19), 10776-10791 (2012)
  PUBMED    22837215
REFERENCE   2 (bases 1 to 561)
            Show all sequences for reference 2
  AUTHORS   Li,Y., Ndjango,J.-B., Learn,G.H., Keele,B.F., Bibollet-Ruche,F.,
	    Easlick,J., Decker,J.M., Rudicell,R.S., Inogwabini,B.-I.,
	    Ahuka-Mundeke,S., Leendertz,F.H., Reynolds,V., Muller,M.N.,
	    Chancellor,R.L., Rundus,A.S., Simmonds,N., Worobey,M., Shaw,G.M.,
	    Peeters,M., Sharp,P.M. and Hahn,B.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2012) Dept. of Medicine, Perelman School of
	    Medicine, University of Pennsylvania, Johnson Pavilion 423, 3610
	    Hamilton Walk, Philadelphia, PA 19104, USA
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. 4 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..561
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="OP3369"
		     /isolation_source="feces"
		     /host="Pan troglodytes schweinfurthii"
		     /db_xref="taxon:11723"
		     /country="Democratic Republic of the Congo"
		     /collection_date="20-Apr-2011"
     gene	     1..>561
		     /gene="gag"
     CDS	     1..>561
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag polyprotein"
		     /protein_id="AFM85341.1"
		     /db_xref="GI:392872143"
		     /translation="MGARASVLRGEKLDTWESVRLRPGGKKKYLIKHLVWAGNQLERF
		     ALNPGLMETKEGCEKIITQLQPSVEIGSPEIVSLYNTICVLYCIHAGEKIKDTEEAVN
		     IVKMKGDKSESKNTSRTTATSSGEKQEQAATARAPPSGQRGLYPNIATGGNYPIITDA
		     QGIARHQPISPRTLNAWVRTVEEKSFS"
BASE COUNT	200 a	 110 c	  141 g    110 t
ORIGIN
       1 atgggtgcga gagcgtcagt gttgagggga gaaaagcttg atacttggga aagtgtcagg 
      61 ctgcgtcccg gaggcaagaa aaaatatttg ataaaacatc tagtatgggc cggaaatcaa 
     121 ctagagcgct ttgcgctaaa ccccggcctc atggaaacaa aagagggttg cgaaaaaatc 
     181 atcacgcagt tgcaaccttc agtggagata gggtcacctg aaattgtctc cttgtacaat 
     241 actatttgtg tgctttattg catacacgca ggagaaaaaa ttaaagacac ggaagaagct 
     301 gtaaacatag tgaaaatgaa aggagacaaa agtgaaagca aaaatacaag tagaaccaca 
     361 gcgacatcta gtggtgaaaa gcaggaacag gcagcaactg ctcgagctcc ccctagcgga 
     421 cagagaggct tatatccaaa catagcaact ggtgggaatt atcccatcat aacagatgca 
     481 caagggatag ctagacacca gcctatctca ccaaggactc tgaatgcctg ggtaaggaca 
     541 gtagaagaaa aatcattcag t
//
last modified: Tue May 31 10:56 2022


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