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LOCUS JQ864175 2655 bp DNA linear VRL 15-JUL-2012
DEFINITION Simian immunodeficiency virus isolate H808-24w-5 envelope
glycoprotein (env) gene, complete cds
ACCESSION JQ864175
VERSION JQ864175.1 GI:392499054
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2655)
Show all sequences for reference 1
AUTHORS Wu,F., Ourmanov,I., Kuwata,T., Goeken,R., Brown,C.R.,
Buckler-White,A., Iyengar,R., Plishka,R., Aoki,S.T. and Hirsch,V.M.
TITLE Sequential Evolution and Escape from Neutralization of Simian
Immunodeficiency Virus SIVsmE660 Clones in Rhesus Macaques.
JOURNAL J. Virol.. 86(16); 8835-47 (2012)
PUBMED 22696650
REFERENCE 2 (bases 1 to 2655)
Show all sequences for reference 2
AUTHORS Wu,F., Ourmanov,I., Kuwata,T., Goeken,R., Brown,C.R.,
Buckler-White,A., Iyengar,R., Plishka,R., Aoki,S.T. and Hirsch,V.M.
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2012) Laboratory of Molecular Microbiology,
NIAID, NIH, 4 Center Drive, Room B1-33, Bethesda, MD 20892, USA
FEATURES Location/Qualifiers
source 1..2655
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="H808-24w-5"
/host="Macaca mulatta (rhesus macaque)"
/db_xref="taxon:11723"
/country="USA"
/collection_date="24-Jan-2011"
gene 1..2655
/gene="env"
CDS 1..2655
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFM75812.1"
/db_xref="GI:392499055"
/translation="MGCLGNQLLIALLLVSALEIYCVQYVTVFYGVPAWKNATIPLFC
TTRNRDTWGTTQCLPDNDDYSELAINITEAFDAWNNTVTEQAIEDVWNLFETSIKPCV
KLTPLCIAMRCNKTETDRWGLTRNAGTTTTTTTAATPSVAENVINESNPCIKNNSCAG
LEQEPMIGCKFNMTGLKRDKKIEYNETWYSRDLICEQSANESESKCYMHHCNTSVIQE
SCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFAPNCSKVVVSSCTRMMETQTSTWFG
FNGTRAENRTYIYWHGKSNRTIISLNKYYNLTMRCKRPGNKTVLPVTIMSGLVFHSQP
INERPKQAWCWFGGSWKEAIQEVKETLVKHPGYTGTNDTRKINLTAPAGGDPEVTFMW
TNCRGEFLYCKMNWFLNWVEDRDQNGSRWEQQNTKERQKRNYVPCHIRQIINTWHKVG
KNVYLPPREGDLTCNSTVTSLIAEIDWTNSKETNITMSAEVAELYRLELGDYKLVEIT
PIGLAPTSVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLAGI
VQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNSWGCAFRQVCHT
TVPWPNETLVPNWSNMTWQEWERQVDFLEANITQLLEEAQIQQEKNMYELQKLNSWDI
FGNWFDLTSWIRYIQYGVLIVLGVVGLRIVIYVVQMLARLRQGYRPVFSSPPAYVQQI
PIHKDQEPPTKEGEEGEGGDRGGNRSWPWQIEYIHFLIRQLIRLLTWLFSSCRDWLLR
TYQILQPVLQSLSTTSQRVREVIRIGIAYLQYGWRYFQEAVQAWWKFARETLASAWRE
IWETLGRVGRGILAIPRRVRQGLELTLL"
BASE COUNT 860 a 480 c 657 g 658 t
ORIGIN
1 atgggatgtc ttgggaatca gctgcttatc gcgctcttgc tagtaagtgc tttagagatt
61 tattgtgttc aatatgtaac agtattctat ggtgtaccag catggaagaa tgcgacaatt
121 cccctcttct gtacaaccag gaatagggac acttggggaa caacacaatg cttgccagat
181 aatgatgatt actcagaatt agcaatcaat atcacagagg cttttgatgc ttggaataat
241 acagtcacag aacaagcaat agaggatgtg tggaacctct ttgaaacatc cattaagccc
301 tgtgtaaaac tcaccccact atgtatagca atgagatgta ataaaactga gacagatagg
361 tggggtttga caaggaacgc agggacaaca acaacaacaa caacagcagc aacaccaagt
421 gtggcagaaa atgttataaa tgaaagtaat ccttgcataa aaaataatag ttgtgcaggc
481 ttggaacagg agcccatgat aggttgtaaa tttaacatga cagggttaaa aagggacaaa
541 aagatagagt ataatgaaac atggtattca agagatttaa tctgtgagca gtcagcgaat
601 gaaagtgaga gtaaatgtta catgcatcat tgtaacacca gtgttattca ggaatcctgt
661 gacaagcatt attgggatgc tattagattt agatattgtg caccgccagg ttatgctttg
721 cttaggtgta atgattcaaa ttattcaggc tttgctccta actgttctaa ggtagtggtt
781 tcttcatgca caagaatgat ggagacgcaa acctctactt ggtttggctt caatggtact
841 agggcagaaa atagaacata catttattgg catggcaaaa gtaatagaac cataattagt
901 ttaaataagt attataatct aacaatgaga tgtaaaagac caggaaataa gacagtttta
961 ccagtcacca ttatgtcagg gttggtcttc cattcgcagc ccataaatga gagaccaaaa
1021 caggcctggt gctggtttgg aggaagctgg aaagaggcca tccaggaagt gaaggaaacc
1081 ttggtcaaac atcccgggta tacgggaact aatgatacta ggaaaattaa tctaacagct
1141 ccagcaggag gagatccaga agtcactttt atgtggacaa attgtcgagg agaattctta
1201 tattgcaaaa tgaattggtt tcttaattgg gtagaggaca gagaccaaaa tggtagcaga
1261 tgggaacaac aaaatacgaa agagcgacag aagagaaatt atgtgccatg tcatattaga
1321 caaataatca acacgtggca caaagtaggc aaaaatgtat atttgcctcc tagggaagga
1381 gacctgacat gtaattccac tgtaactagt ctcatagcag agatagattg gaccaatagc
1441 aaggagacca atatcaccat gagtgcagag gtggcagaac tgtatcgatt ggagttggga
1501 gattacaaat tagtagagat tactccaatt ggcttggccc ccacaagtgt aagaaggtac
1561 accacaactg gtgcctcaag aaataagaga ggggtctttg tgctagggtt cttgggtttt
1621 ctcgcgacag caggttctgc aatgggcgcg gcgtcgctga cgctgtcggc tcagtcccgg
1681 actttgttgg ctgggatagt gcagcaacag caacagctgt tggatgtggt caagagacaa
1741 caagaattgt tgcgactgac cgtctgggga actaagaacc tccagactag agtcactgct
1801 atcgagaagt acctgaagga tcaggcgcag ctaaattcat ggggatgtgc ttttaggcaa
1861 gtctgtcaca ctactgtacc atggccaaat gaaacattgg tgcctaattg gagcaatatg
1921 acttggcaag agtgggaaag acaggttgac ttcctagagg caaatataac tcaattatta
1981 gaagaagcac aaattcagca agaaaagaat atgtatgaat tgcaaaaact aaatagctgg
2041 gatatctttg gcaattggtt tgaccttact tcttggataa gatatataca atatggtgta
2101 ttaatagttt taggagtagt agggttaaga atagtaatat atgtagtgca gatgttagct
2161 aggttaagac agggttatag gccagtgttc tcttcccctc ccgcttatgt tcagcagatc
2221 cctatccaca aggaccagga accgccaacc aaagaaggag aagaaggaga aggtggagac
2281 agaggtggca acagatcttg gccttggcag atagaatata ttcatttcct gatccgccaa
2341 ctgatacgcc tcttgacttg gctattcagc agctgcaggg attggctatt gaggacctac
2401 cagatcctcc aaccagtact ccaaagcctc tcaacgacgt cgcaaagagt ccgtgaagtc
2461 atcagaattg gaatagccta cctacaatat gggtggcgct atttccaaga agcagtgcag
2521 gcgtggtgga aatttgcgcg agagactctt gcaagcgcgt ggagagaaat atgggagact
2581 ctgggaaggg ttggaagagg gatactcgca atccctaggc gcgtcaggca agggcttgag
2641 ctcactctct tgtga
//
last modified: Tue May 31 10:56 2022