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LOCUS	    JQ864174		    2661 bp    DNA     linear	VRL 15-JUL-2012
DEFINITION  Simian immunodeficiency virus isolate H808-24w-4 envelope
	    glycoprotein (env) gene, complete cds
ACCESSION   JQ864174
VERSION     JQ864174.1 GI:392499052
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2661)
            Show all sequences for reference 1
  AUTHORS   Wu,F., Ourmanov,I., Kuwata,T., Goeken,R., Brown,C.R.,
	    Buckler-White,A., Iyengar,R., Plishka,R., Aoki,S.T. and Hirsch,V.M.
  TITLE     Sequential Evolution and Escape from Neutralization of Simian
	    Immunodeficiency Virus SIVsmE660 Clones in Rhesus Macaques.
  JOURNAL   J. Virol.. 86(16); 8835-47 (2012)
  PUBMED    22696650
REFERENCE   2 (bases 1 to 2661)
            Show all sequences for reference 2
  AUTHORS   Wu,F., Ourmanov,I., Kuwata,T., Goeken,R., Brown,C.R.,
	    Buckler-White,A., Iyengar,R., Plishka,R., Aoki,S.T. and Hirsch,V.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2012) Laboratory of Molecular Microbiology,
	    NIAID, NIH, 4 Center Drive, Room B1-33, Bethesda, MD 20892, USA
FEATURES             Location/Qualifiers
     source	     1..2661
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="H808-24w-4"
		     /host="Macaca mulatta (rhesus macaque)"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /collection_date="24-Jan-2011"
     gene	     1..2661
		     /gene="env"
     CDS	     1..2661
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFM75811.1"
		     /db_xref="GI:392499053"
		     /translation="MGCLGNQLLIALLLVSALEIYCVQYVTVFYGVPAWRNATIPLFC
		     ATRNRDTWGTTQCLPDNDDYSELAINITEAFDAWNNTVTEQAIEDVWNLFETSIKPCV
		     KLTPLCIAMRCNKTETDRWGLTRNAGTTTTTTTTTAATPSVAENVINESNPCIKNNSC
		     AGLEQEPMIGCKFNMTGLKRDKRIEYNETWYSRDLICEQSANESESKCYMHHCNTSVI
		     QESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFAPNCSKVVVSSCTRMMETQTSTW
		     FGFNGTRAENRTYIYWHGKSNRTIISLNKYYNLTMRCKRPGNKTVLPVTIMSGLVFHS
		     QPINERPKQAWCWFGGSWKEAIQEVKETLVKHPRYTGTNDTRKINLTAPAGGDPEVTF
		     MWTNCRGEFLYCKMNWFLNWVEDRDQNGSRWEQQNTKERQKRNYVPCHIRQIINTWHK
		     VGKNVYLPPREGDLTCNSTVTSLIAEIDWTNSNETNITMSAEVAELYRLELGDYKLVE
		     ITPIGLAPTSVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLA
		     GIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNSWGCAFRQVC
		     HTTVPWPNETLVPNWSNMTWQECERQVDFLEANITQLLEEAQIQQEKNMYELQKLNSW
		     DIFGNWFDLTSWIRYIQYGVLIVLGVVGLRIVIYVVQMLARLRQGYRPVFSSPPAYVQ
		     QIPIHKDQEPPTKEGEEGEGGDRGGNRSWPWQIEYIHFLIRQLIRLLTWLFSSCRDWL
		     LRTYQILQPVLQSLSTTSQRVREVIRIGIAYLQYGWRYFQEAVQAWWKFARETLASAW
		     REIWETLGRVGRGILAIPRRVRQGLELTLL"
BASE COUNT	864 a	 482 c	  655 g    660 t
ORIGIN
       1 atgggatgtc ttgggaatca gctgcttatc gcgctcttgc tagtaagtgc tttagagatt 
      61 tattgtgttc aatatgtaac agtattctat ggtgtaccag catggaggaa tgcgacaatt 
     121 cccctcttct gtgcaaccag gaatagggac acttggggaa caacacaatg cttgccagat 
     181 aatgatgatt actcagaatt agcaatcaat atcacagagg cttttgatgc ttggaataat 
     241 acagtcacag aacaagcaat agaggatgtg tggaacctct ttgaaacatc cattaagccc 
     301 tgtgtaaaac tcaccccact atgtatagca atgagatgta ataaaactga gacagatagg 
     361 tggggtttga caaggaacgc agggacaaca acaacaacaa caacaacaac agcagcaaca 
     421 ccaagtgtgg cagaaaatgt tataaatgaa agtaatcctt gcataaaaaa taatagttgt 
     481 gcaggcttgg aacaggagcc catgataggt tgtaaattta acatgacagg gttaaaaagg 
     541 gacaaaagga tagaatataa tgaaacatgg tattcaagag atttaatctg tgagcagtca 
     601 gcgaatgaaa gtgagagtaa atgttacatg catcattgta acaccagtgt tattcaggaa 
     661 tcctgtgaca agcattattg ggatgctatt agatttagat attgtgcacc gccaggttat 
     721 gctttgctta ggtgtaatga ttcaaattat tcaggctttg ctcctaactg ttctaaggta 
     781 gtggtttctt catgcacaag aatgatggag acgcaaacct ctacttggtt tggcttcaat 
     841 ggtactaggg cagaaaatag aacatacatt tattggcatg gcaaaagtaa tagaaccata 
     901 attagtttaa ataagtatta taatctaaca atgagatgta aaagaccagg aaataagaca 
     961 gttttaccag tcaccattat gtcagggttg gtcttccatt cgcagcccat aaatgagaga 
    1021 ccaaaacagg cctggtgctg gtttggagga agctggaaag aggccatcca ggaagtgaag 
    1081 gaaaccttgg tcaaacatcc caggtatacg ggaactaatg atactaggaa aattaatcta 
    1141 acagctccag caggaggaga tccagaagtc acttttatgt ggacaaattg tcgaggagaa 
    1201 ttcttatatt gcaaaatgaa ttggtttctt aattgggtag aggacagaga ccaaaatggt 
    1261 agcagatggg aacaacaaaa tacgaaagag cgacagaaga gaaattatgt gccatgtcat 
    1321 attagacaaa taatcaacac gtggcacaaa gtaggcaaaa atgtatattt gcctcctagg 
    1381 gaaggagacc tgacatgtaa ttccactgta actagtctca tagcagagat agattggacc 
    1441 aatagcaatg agaccaatat caccatgagt gcagaggtgg cagaactgta tcgattggag 
    1501 ttgggagatt acaaattagt agagattact ccaattggct tggcccccac aagtgtaaga 
    1561 aggtacacca caactggtgc ctcaagaaat aagagagggg tctttgtgct agggttcttg 
    1621 ggttttctcg cgacagcagg ttctgcaatg ggcgcggcgt cgctgacgct gtcggctcag 
    1681 tcccggactt tgttggctgg gatagtgcag caacagcaac agctgttgga tgtggtcaag 
    1741 agacaacaag aattgttgcg actgaccgtc tggggaacta agaacctcca gactagagtc 
    1801 actgctatcg agaagtacct aaaggatcag gcgcagctaa attcatgggg atgtgctttt 
    1861 aggcaagtct gtcacactac tgtaccatgg ccaaatgaaa cattggtgcc taattggagc 
    1921 aatatgactt ggcaagagtg tgaaagacag gttgacttcc tagaggcaaa tataactcaa 
    1981 ttattagaag aagcacaaat tcagcaagaa aagaatatgt atgaattgca aaaactaaat 
    2041 agctgggata tctttggcaa ttggtttgac cttacttctt ggataagata tatacaatat 
    2101 ggtgtattaa tagttttagg agtagtaggg ttaagaatag taatatatgt agtgcagatg 
    2161 ttagctaggt taagacaggg ttataggcca gtgttctctt cccctcccgc ttatgttcag 
    2221 cagatcccta tccacaagga ccaggaaccg ccaaccaaag aaggagaaga aggagaaggt 
    2281 ggagacagag gtggcaacag atcttggcct tggcagatag aatatattca tttcctgatc 
    2341 cgccaactga tacgcctctt gacttggcta ttcagcagct gcagggattg gctattgagg 
    2401 acctaccaga tcctccaacc agtactccaa agcctctcaa cgacgtcgca aagagtccgt 
    2461 gaagtcatca gaattggaat agcctaccta caatatgggt ggcgctattt ccaagaagca 
    2521 gtgcaggcgt ggtggaaatt tgcgcgagag actcttgcaa gcgcgtggag agaaatatgg 
    2581 gagactctgg gaagggttgg aagagggata ctcgcaatcc ctaggcgcgt caggcaaggg 
    2641 cttgagctca ctctcttgtg a
//
last modified: Tue May 31 10:56 2022


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