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LOCUS JQ864174 2661 bp DNA linear VRL 15-JUL-2012
DEFINITION Simian immunodeficiency virus isolate H808-24w-4 envelope
glycoprotein (env) gene, complete cds
ACCESSION JQ864174
VERSION JQ864174.1 GI:392499052
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2661)
Show all sequences for reference 1
AUTHORS Wu,F., Ourmanov,I., Kuwata,T., Goeken,R., Brown,C.R.,
Buckler-White,A., Iyengar,R., Plishka,R., Aoki,S.T. and Hirsch,V.M.
TITLE Sequential Evolution and Escape from Neutralization of Simian
Immunodeficiency Virus SIVsmE660 Clones in Rhesus Macaques.
JOURNAL J. Virol.. 86(16); 8835-47 (2012)
PUBMED 22696650
REFERENCE 2 (bases 1 to 2661)
Show all sequences for reference 2
AUTHORS Wu,F., Ourmanov,I., Kuwata,T., Goeken,R., Brown,C.R.,
Buckler-White,A., Iyengar,R., Plishka,R., Aoki,S.T. and Hirsch,V.M.
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2012) Laboratory of Molecular Microbiology,
NIAID, NIH, 4 Center Drive, Room B1-33, Bethesda, MD 20892, USA
FEATURES Location/Qualifiers
source 1..2661
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="H808-24w-4"
/host="Macaca mulatta (rhesus macaque)"
/db_xref="taxon:11723"
/country="USA"
/collection_date="24-Jan-2011"
gene 1..2661
/gene="env"
CDS 1..2661
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFM75811.1"
/db_xref="GI:392499053"
/translation="MGCLGNQLLIALLLVSALEIYCVQYVTVFYGVPAWRNATIPLFC
ATRNRDTWGTTQCLPDNDDYSELAINITEAFDAWNNTVTEQAIEDVWNLFETSIKPCV
KLTPLCIAMRCNKTETDRWGLTRNAGTTTTTTTTTAATPSVAENVINESNPCIKNNSC
AGLEQEPMIGCKFNMTGLKRDKRIEYNETWYSRDLICEQSANESESKCYMHHCNTSVI
QESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFAPNCSKVVVSSCTRMMETQTSTW
FGFNGTRAENRTYIYWHGKSNRTIISLNKYYNLTMRCKRPGNKTVLPVTIMSGLVFHS
QPINERPKQAWCWFGGSWKEAIQEVKETLVKHPRYTGTNDTRKINLTAPAGGDPEVTF
MWTNCRGEFLYCKMNWFLNWVEDRDQNGSRWEQQNTKERQKRNYVPCHIRQIINTWHK
VGKNVYLPPREGDLTCNSTVTSLIAEIDWTNSNETNITMSAEVAELYRLELGDYKLVE
ITPIGLAPTSVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLA
GIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNSWGCAFRQVC
HTTVPWPNETLVPNWSNMTWQECERQVDFLEANITQLLEEAQIQQEKNMYELQKLNSW
DIFGNWFDLTSWIRYIQYGVLIVLGVVGLRIVIYVVQMLARLRQGYRPVFSSPPAYVQ
QIPIHKDQEPPTKEGEEGEGGDRGGNRSWPWQIEYIHFLIRQLIRLLTWLFSSCRDWL
LRTYQILQPVLQSLSTTSQRVREVIRIGIAYLQYGWRYFQEAVQAWWKFARETLASAW
REIWETLGRVGRGILAIPRRVRQGLELTLL"
BASE COUNT 864 a 482 c 655 g 660 t
ORIGIN
1 atgggatgtc ttgggaatca gctgcttatc gcgctcttgc tagtaagtgc tttagagatt
61 tattgtgttc aatatgtaac agtattctat ggtgtaccag catggaggaa tgcgacaatt
121 cccctcttct gtgcaaccag gaatagggac acttggggaa caacacaatg cttgccagat
181 aatgatgatt actcagaatt agcaatcaat atcacagagg cttttgatgc ttggaataat
241 acagtcacag aacaagcaat agaggatgtg tggaacctct ttgaaacatc cattaagccc
301 tgtgtaaaac tcaccccact atgtatagca atgagatgta ataaaactga gacagatagg
361 tggggtttga caaggaacgc agggacaaca acaacaacaa caacaacaac agcagcaaca
421 ccaagtgtgg cagaaaatgt tataaatgaa agtaatcctt gcataaaaaa taatagttgt
481 gcaggcttgg aacaggagcc catgataggt tgtaaattta acatgacagg gttaaaaagg
541 gacaaaagga tagaatataa tgaaacatgg tattcaagag atttaatctg tgagcagtca
601 gcgaatgaaa gtgagagtaa atgttacatg catcattgta acaccagtgt tattcaggaa
661 tcctgtgaca agcattattg ggatgctatt agatttagat attgtgcacc gccaggttat
721 gctttgctta ggtgtaatga ttcaaattat tcaggctttg ctcctaactg ttctaaggta
781 gtggtttctt catgcacaag aatgatggag acgcaaacct ctacttggtt tggcttcaat
841 ggtactaggg cagaaaatag aacatacatt tattggcatg gcaaaagtaa tagaaccata
901 attagtttaa ataagtatta taatctaaca atgagatgta aaagaccagg aaataagaca
961 gttttaccag tcaccattat gtcagggttg gtcttccatt cgcagcccat aaatgagaga
1021 ccaaaacagg cctggtgctg gtttggagga agctggaaag aggccatcca ggaagtgaag
1081 gaaaccttgg tcaaacatcc caggtatacg ggaactaatg atactaggaa aattaatcta
1141 acagctccag caggaggaga tccagaagtc acttttatgt ggacaaattg tcgaggagaa
1201 ttcttatatt gcaaaatgaa ttggtttctt aattgggtag aggacagaga ccaaaatggt
1261 agcagatggg aacaacaaaa tacgaaagag cgacagaaga gaaattatgt gccatgtcat
1321 attagacaaa taatcaacac gtggcacaaa gtaggcaaaa atgtatattt gcctcctagg
1381 gaaggagacc tgacatgtaa ttccactgta actagtctca tagcagagat agattggacc
1441 aatagcaatg agaccaatat caccatgagt gcagaggtgg cagaactgta tcgattggag
1501 ttgggagatt acaaattagt agagattact ccaattggct tggcccccac aagtgtaaga
1561 aggtacacca caactggtgc ctcaagaaat aagagagggg tctttgtgct agggttcttg
1621 ggttttctcg cgacagcagg ttctgcaatg ggcgcggcgt cgctgacgct gtcggctcag
1681 tcccggactt tgttggctgg gatagtgcag caacagcaac agctgttgga tgtggtcaag
1741 agacaacaag aattgttgcg actgaccgtc tggggaacta agaacctcca gactagagtc
1801 actgctatcg agaagtacct aaaggatcag gcgcagctaa attcatgggg atgtgctttt
1861 aggcaagtct gtcacactac tgtaccatgg ccaaatgaaa cattggtgcc taattggagc
1921 aatatgactt ggcaagagtg tgaaagacag gttgacttcc tagaggcaaa tataactcaa
1981 ttattagaag aagcacaaat tcagcaagaa aagaatatgt atgaattgca aaaactaaat
2041 agctgggata tctttggcaa ttggtttgac cttacttctt ggataagata tatacaatat
2101 ggtgtattaa tagttttagg agtagtaggg ttaagaatag taatatatgt agtgcagatg
2161 ttagctaggt taagacaggg ttataggcca gtgttctctt cccctcccgc ttatgttcag
2221 cagatcccta tccacaagga ccaggaaccg ccaaccaaag aaggagaaga aggagaaggt
2281 ggagacagag gtggcaacag atcttggcct tggcagatag aatatattca tttcctgatc
2341 cgccaactga tacgcctctt gacttggcta ttcagcagct gcagggattg gctattgagg
2401 acctaccaga tcctccaacc agtactccaa agcctctcaa cgacgtcgca aagagtccgt
2461 gaagtcatca gaattggaat agcctaccta caatatgggt ggcgctattt ccaagaagca
2521 gtgcaggcgt ggtggaaatt tgcgcgagag actcttgcaa gcgcgtggag agaaatatgg
2581 gagactctgg gaagggttgg aagagggata ctcgcaatcc ctaggcgcgt caggcaaggg
2641 cttgagctca ctctcttgtg a
//
last modified: Tue May 31 10:56 2022