View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JQ775997 3575 bp RNA linear SYN 13-AUG-2012
DEFINITION Simian-Human immunodeficiency virus isolate SHIVAD8-CE8J.B2 vpr
protein (vpr), tat protein (tat), rev protein (rev), and envelope
glycoprotein (env) genes, complete cds; and nonfunctional nef
protein (nef) gene, complete sequence
ACCESSION JQ775997
VERSION JQ775997.1 GI:399903754
KEYWORDS .
SOURCE Simian-Human immunodeficiency virus
ORGANISM Simian-Human immunodeficiency virus Viruses; Retro-transcribing
viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Primate
lentivirus group; unclassified Primate lentivirus group
REFERENCE 1 (bases 1 to 3575)
Show all sequences for reference 1
AUTHORS Gautam,R., Nishimura,Y., Lee,W.R., Donau,O., Buckler-White,A.,
Shingai,M., Sadjadpour,R., Schmidt,S.D., LaBranche,C.C.,
Keele,B.F., Montefiori,D., Mascola,J.R. and Martin,M.A.
TITLE Pathogenicity and Mucosal Transmissibility of the R5-Tropic
Simian/Human Immunodeficiency Virus SHIVAD8 in Rhesus Macaques:
Implications for Use in Vaccine Studies
JOURNAL J. Virol. 86 (16), 8516-8526 (2012)
PUBMED 22647691
REFERENCE 2 (bases 1 to 3575)
Show all sequences for reference 2
AUTHORS Gautam,R., Nishimura,Y., Lee,W.R., Donau,O., Buckler-White,A.,
Shingai,M., Sadjadpour,R., Smith,S.D., LeBranche,C.C., Keele,B.F.,
Montefiori,D., Mascola,J.R. and Martin,M.A.
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2012) AIDS and Cancer Virus Program,
SAIC-Frederick, National Cancer Institute, 1050 Boyles Street,
Frederick, MD 21702, USA
FEATURES Location/Qualifiers
source 1..3575
/organism="Simian-Human immunodeficiency virus"
/mol_type="other RNA"
/isolate="SHIVAD8-CE8J.B2"
/host="Macaca mulatta"
/db_xref="taxon:57667"
/country="USA"
/collection_date="21-May-2009"
gene 1..291
/gene="vpr"
CDS 1..291
/gene="vpr"
/codon_start="1"
/transl_table="1"
/product="vpr protein"
/protein_id="AFP54889.1"
/db_xref="GI:399903755"
/translation="MEERPPEDEGPQREPWNEWTLELLEELKNEAVRHFPRIWLHNLG
QHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRRRTRNGASRS"
gene 272..2895
/gene="tat"
CDS join(272..486,2805..2895)
/gene="tat"
/codon_start="1"
/transl_table="1"
/product="tat protein"
/protein_id="AFP54890.1"
/db_xref="GI:399903756"
/translation="MEPVDPRLEPWKHPGSQPRTACNNCYCKKCCFHCQVCFTRKGLG
ISYGRKKRRQRRRTPQGSQTHQLSLSKQPTSQPRGDPTGPKESKKKVETETETDPCD"
gene 411..3079
/gene="rev"
CDS join(411..486,2805..3079)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AFP54891.1"
/db_xref="GI:399903757"
/translation="MAGRSGDSDEELLKAVRLINFLYQSNPPPNPEGTRQARRNRRRR
WRQRQRQIRAISGRILDTFLERPAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGNPQV
LVESPAVLESGTKE"
gene 666..3221
/gene="env"
CDS 666..3221
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFP54892.1"
/db_xref="GI:399903758"
/translation="MKVKGIRKNYQHLWKWGIMLLGMLMICSAVENLWVTVYYGVPVW
KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTDLNVTNFNNSSEGMKREMRNCSFNITTSI
RDKVKKDYALFYRLDVVPIDNENNSYRLINCNTSTITQACPKVSFEPIPIHYCTPAGF
AILKCKDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSSNFTDNT
KNIIVQLKESVEINCTRPNNNTRKSIHIGPGRAFYTTGDITGDTRRAYCNISRTKWND
TLNQIATKLKEQFGNNKTIIFSPSSGGDPGIVMHSFNCGGEFFYCNSTQLFNSTWGFN
GTWNSTQSNGGNDNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLILTRD
GGNSHNNDNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVG
AIGAMFLGFLGAAGSTMGAASITLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVW
GIKQLQARVLAMERYLRDQQLLGIWGCSGKLICTTAVPWNASWSNKSLDMIWNNMTWM
EWEREIDNYTGLIYTLIEESQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIM
IVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGDRDRDRS
VRLVDGFLTLFWNDLRSLCLFSYHRLRDLLLIVTRTVELLGRRGWETLKYWWNLLQYW
SQELRNSAVRLLNATAIAVAEGTDRVIEVVLRICRAILRIPTRIRQGLERTLL"
gene 3226..3575
/gene="nef"
misc_feature 3226..3575
/gene="nef"
/note="nonfunctional nef protein due to mutation"
BASE COUNT 1259 a 602 c 857 g 857 t
ORIGIN
1 atggaagaaa gacctccaga agatgaagga ccacaaaggg aaccatggaa tgaatggaca
61 ctagagcttt tagaggaact taagaatgaa gctgttagac attttcctag gatatggctc
121 cataatttag gacaacatat ctatgaaact tacggggata cttgggcagg agtggaagcc
181 ataataagaa ttctgcaaca actgctgttt attcatttca gaattgggtg tcaacatagc
241 agaataggca ttattcgaag gagaacaaga aatggagcca gtagatccta gactagagcc
301 ctggaagcat ccaggaagcc agcctaggac tgcttgtaat aattgctatt gtaaaaagtg
361 ttgctttcat tgccaagttt gcttcacgag aaaaggctta ggcatctcct atggcaggaa
421 gaagcggaga cagcgacgaa gaactcctca aggcagtcag actcatcaac tttctctatc
481 aaagcagtaa gtagtaaatg taatgcaacc tttacaaata ttagcaatag tagcattagt
541 agtaataaca atactagcaa taggtgtgtg gaccatagta ttcatagaat ataggaaaat
601 attaagacaa agaaaaatag acaggttaat tgataggata acagaaagag cagaagacag
661 tggcaatgaa agtgaagggg atcaggaaga attatcaaca cttatggaaa tggggcatca
721 tgctcctcgg gatgttgatg atctgtagtg ctgtagaaaa tttgtgggtc acagtttatt
781 atggggtacc tgtgtggaaa gaagcaacca ccactctatt ttgtgcatca gatgctaaag
841 catatgatac agaggtacat aatgtttggg ccacacatgc ctgtgtaccc acagacccca
901 acccacaaga agtagtattg gaaaatgtga cagaaaattt taacatgtgg aaaaataaca
961 tggtagaaca gatgcatgag gatataatca gtttatggga tcaaagccta aagccatgtg
1021 taaaattaac cccactctgt gttactttaa attgcactga tttgaatgtt actaatttca
1081 ataatagtag tgagggaatg aaaagagaaa tgagaaactg ctctttcaat atcaccacaa
1141 gcataagaga taaggtgaag aaagactatg cactttttta tagacttgat gtagtaccaa
1201 tagataatga gaataatagc tataggttga taaattgtaa tacctcaacc attacacagg
1261 cctgtccaaa ggtatccttt gagccaattc ccatacatta ttgtaccccg gctggttttg
1321 cgattctaaa gtgtaaagat aagaagttca atggaacagg gccatgtaaa aatgtcagca
1381 cagtacaatg tacacatgga attaggccag tagtgtcaac tcaactgctg ttaaatggca
1441 gtctagcaga agaagaggta gtgattagat ctagtaattt cacagacaat acaaaaaaca
1501 taatagtaca gttgaaagaa tctgtagaaa ttaattgtac aagacccaac aacaatacaa
1561 ggaaaagtat acatatagga ccaggaagag cattttatac aacaggagac ataacaggag
1621 atacaagacg agcatattgc aacattagta gaacaaaatg gaatgacact ttaaatcaaa
1681 tagctacaaa attaaaagaa caatttggga ataataaaac aataatcttt agtccatcct
1741 caggagggga cccaggaatt gtaatgcaca gttttaattg tggaggggaa tttttctact
1801 gtaattcaac acaactgttt aatagtactt ggggttttaa tggtacttgg aattcaacac
1861 aatcaaatgg tggaaatgac aatatcacac tcccatgtag aataaaacaa attataaaca
1921 tgtggcaaga agtaggaaaa gcaatgtatg cccctcccat cagaggacaa attagatgtt
1981 catcaaatat tacagggcta atattaacaa gagatggtgg aaatagccac aataatgata
2041 acgagacctt tagacctgga ggaggagata tgagggacaa ttggagaagt gaattgtata
2101 aatataaagt agtaaaaatc gaaccattag gagtagcacc caccaaggca aagagaagag
2161 tggtgcagag agaaaaaaga gcagtgggag caataggagc tatgttcctt gggttcttgg
2221 gagcagcagg aagcactatg ggcgcagcgt caataacgct gacggtacag gccagactat
2281 tattgtctgg tatagtgcaa cagcagaaca acctgctgag ggctattgag gcgcaacagc
2341 atctgttgca actcacagtc tggggcatca agcagctcca ggcaagagtc ctggctatgg
2401 agagatacct aagggatcaa cagctcctag ggatttgggg ttgctctgga aaactcatct
2461 gcaccactgc tgtgccttgg aatgctagtt ggagtaataa atctttggat atgatttgga
2521 ataacatgac ctggatggag tgggaaagag agatcgacaa ctacacaggc ttaatataca
2581 cattaattga agaatcgcag aaccagcaag aaaagaatga acaagaatta ttagaattag
2641 ataagtgggc aagtttgtgg aattggtttg acataacaaa gtggctgtgg tatataaaaa
2701 tattcataat gatagtagga ggcttgatag gtttaagaat agtttttact gtactttcta
2761 tagtaaatag agttaggcag ggatactcac cattgtcgtt tcagacccac ctcccaaccc
2821 cgaggggacc cgacaggccc gaaggaatcg aagaagaagg tggagacaga gacagagaca
2881 gatccgtgcg attagtggac ggattcttga cacttttctg gaacgacctg cggagcctgt
2941 gcctcttcag ctaccaccgc ttgagagact tactcttgat tgtaacgagg actgtggaac
3001 ttctgggacg cagggggtgg gaaaccctca agtattggtg gaatctcctg cagtattgga
3061 gtcaggaact aaggaatagt gctgttagat tgcttaatgc cacagctata gcagtagctg
3121 aggggacaga tagggttata gaagtagtac taagaatttg tagggctatt ctccgcatac
3181 ctacaagaat aagacagggc ttggaaagga ctttgctata agactatggg tggagctatt
3241 tccatgaggc ggtccaggcc gtctggagat ctgcgcgaga gactcttgcg ggcgcgtgga
3301 gagacttatg ggagactctt aagagaggtg gaagatgaat acccgcaatc cccaggagga
3361 ctaggcaagg gctcgagctc actctcttgt gagggacaga aatacaatca gggacagtat
3421 atgaatactc catggagaaa cccagctgaa gagagaggaa aattagcata cagaaaacaa
3481 aatatgactt ggtaggggta tcagtgaggc caaaagttcc cctaagaaca atgagttaca
3541 aagtggcaat agacatgtct cattttataa aagaa
//
last modified: Tue May 31 10:56 2022