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LOCUS	    JQ775997		    3575 bp    RNA     linear	SYN 13-AUG-2012
DEFINITION  Simian-Human immunodeficiency virus isolate SHIVAD8-CE8J.B2 vpr
	    protein (vpr), tat protein (tat), rev protein (rev), and envelope
	    glycoprotein (env) genes, complete cds; and nonfunctional nef
	    protein (nef) gene, complete sequence
ACCESSION   JQ775997
VERSION     JQ775997.1 GI:399903754
KEYWORDS    .
SOURCE	    Simian-Human immunodeficiency virus
  ORGANISM  Simian-Human immunodeficiency virus Viruses; Retro-transcribing
	    viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Primate
	    lentivirus group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 3575)
            Show all sequences for reference 1
  AUTHORS   Gautam,R., Nishimura,Y., Lee,W.R., Donau,O., Buckler-White,A.,
	    Shingai,M., Sadjadpour,R., Schmidt,S.D., LaBranche,C.C.,
	    Keele,B.F., Montefiori,D., Mascola,J.R. and Martin,M.A.
  TITLE     Pathogenicity and Mucosal Transmissibility of the R5-Tropic
	    Simian/Human Immunodeficiency Virus SHIVAD8 in Rhesus Macaques:
	    Implications for Use in Vaccine Studies
  JOURNAL   J. Virol. 86 (16), 8516-8526 (2012)
  PUBMED    22647691
REFERENCE   2 (bases 1 to 3575)
            Show all sequences for reference 2
  AUTHORS   Gautam,R., Nishimura,Y., Lee,W.R., Donau,O., Buckler-White,A.,
	    Shingai,M., Sadjadpour,R., Smith,S.D., LeBranche,C.C., Keele,B.F.,
	    Montefiori,D., Mascola,J.R. and Martin,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2012) AIDS and Cancer Virus Program,
	    SAIC-Frederick, National Cancer Institute, 1050 Boyles Street,
	    Frederick, MD 21702, USA
FEATURES             Location/Qualifiers
     source	     1..3575
		     /organism="Simian-Human immunodeficiency virus"
		     /mol_type="other RNA"
		     /isolate="SHIVAD8-CE8J.B2"
		     /host="Macaca mulatta"
		     /db_xref="taxon:57667"
		     /country="USA"
		     /collection_date="21-May-2009"
     gene	     1..291
		     /gene="vpr"
     CDS	     1..291
		     /gene="vpr"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpr protein"
		     /protein_id="AFP54889.1"
		     /db_xref="GI:399903755"
		     /translation="MEERPPEDEGPQREPWNEWTLELLEELKNEAVRHFPRIWLHNLG
		     QHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRRRTRNGASRS"
     gene	     272..2895
		     /gene="tat"
     CDS	     join(272..486,2805..2895)
		     /gene="tat"
		     /codon_start="1"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AFP54890.1"
		     /db_xref="GI:399903756"
		     /translation="MEPVDPRLEPWKHPGSQPRTACNNCYCKKCCFHCQVCFTRKGLG
		     ISYGRKKRRQRRRTPQGSQTHQLSLSKQPTSQPRGDPTGPKESKKKVETETETDPCD"
     gene	     411..3079
		     /gene="rev"
     CDS	     join(411..486,2805..3079)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AFP54891.1"
		     /db_xref="GI:399903757"
		     /translation="MAGRSGDSDEELLKAVRLINFLYQSNPPPNPEGTRQARRNRRRR
		     WRQRQRQIRAISGRILDTFLERPAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGNPQV
		     LVESPAVLESGTKE"
     gene	     666..3221
		     /gene="env"
     CDS	     666..3221
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFP54892.1"
		     /db_xref="GI:399903758"
		     /translation="MKVKGIRKNYQHLWKWGIMLLGMLMICSAVENLWVTVYYGVPVW
		     KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCTDLNVTNFNNSSEGMKREMRNCSFNITTSI
		     RDKVKKDYALFYRLDVVPIDNENNSYRLINCNTSTITQACPKVSFEPIPIHYCTPAGF
		     AILKCKDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSSNFTDNT
		     KNIIVQLKESVEINCTRPNNNTRKSIHIGPGRAFYTTGDITGDTRRAYCNISRTKWND
		     TLNQIATKLKEQFGNNKTIIFSPSSGGDPGIVMHSFNCGGEFFYCNSTQLFNSTWGFN
		     GTWNSTQSNGGNDNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLILTRD
		     GGNSHNNDNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVG
		     AIGAMFLGFLGAAGSTMGAASITLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVW
		     GIKQLQARVLAMERYLRDQQLLGIWGCSGKLICTTAVPWNASWSNKSLDMIWNNMTWM
		     EWEREIDNYTGLIYTLIEESQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIM
		     IVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGDRDRDRS
		     VRLVDGFLTLFWNDLRSLCLFSYHRLRDLLLIVTRTVELLGRRGWETLKYWWNLLQYW
		     SQELRNSAVRLLNATAIAVAEGTDRVIEVVLRICRAILRIPTRIRQGLERTLL"
     gene	     3226..3575
		     /gene="nef"
     misc_feature    3226..3575
		     /gene="nef"
		     /note="nonfunctional nef protein due to mutation"
BASE COUNT     1259 a	 602 c	  857 g    857 t
ORIGIN
       1 atggaagaaa gacctccaga agatgaagga ccacaaaggg aaccatggaa tgaatggaca 
      61 ctagagcttt tagaggaact taagaatgaa gctgttagac attttcctag gatatggctc 
     121 cataatttag gacaacatat ctatgaaact tacggggata cttgggcagg agtggaagcc 
     181 ataataagaa ttctgcaaca actgctgttt attcatttca gaattgggtg tcaacatagc 
     241 agaataggca ttattcgaag gagaacaaga aatggagcca gtagatccta gactagagcc 
     301 ctggaagcat ccaggaagcc agcctaggac tgcttgtaat aattgctatt gtaaaaagtg 
     361 ttgctttcat tgccaagttt gcttcacgag aaaaggctta ggcatctcct atggcaggaa 
     421 gaagcggaga cagcgacgaa gaactcctca aggcagtcag actcatcaac tttctctatc 
     481 aaagcagtaa gtagtaaatg taatgcaacc tttacaaata ttagcaatag tagcattagt 
     541 agtaataaca atactagcaa taggtgtgtg gaccatagta ttcatagaat ataggaaaat 
     601 attaagacaa agaaaaatag acaggttaat tgataggata acagaaagag cagaagacag 
     661 tggcaatgaa agtgaagggg atcaggaaga attatcaaca cttatggaaa tggggcatca 
     721 tgctcctcgg gatgttgatg atctgtagtg ctgtagaaaa tttgtgggtc acagtttatt 
     781 atggggtacc tgtgtggaaa gaagcaacca ccactctatt ttgtgcatca gatgctaaag 
     841 catatgatac agaggtacat aatgtttggg ccacacatgc ctgtgtaccc acagacccca 
     901 acccacaaga agtagtattg gaaaatgtga cagaaaattt taacatgtgg aaaaataaca 
     961 tggtagaaca gatgcatgag gatataatca gtttatggga tcaaagccta aagccatgtg 
    1021 taaaattaac cccactctgt gttactttaa attgcactga tttgaatgtt actaatttca 
    1081 ataatagtag tgagggaatg aaaagagaaa tgagaaactg ctctttcaat atcaccacaa 
    1141 gcataagaga taaggtgaag aaagactatg cactttttta tagacttgat gtagtaccaa 
    1201 tagataatga gaataatagc tataggttga taaattgtaa tacctcaacc attacacagg 
    1261 cctgtccaaa ggtatccttt gagccaattc ccatacatta ttgtaccccg gctggttttg 
    1321 cgattctaaa gtgtaaagat aagaagttca atggaacagg gccatgtaaa aatgtcagca 
    1381 cagtacaatg tacacatgga attaggccag tagtgtcaac tcaactgctg ttaaatggca 
    1441 gtctagcaga agaagaggta gtgattagat ctagtaattt cacagacaat acaaaaaaca 
    1501 taatagtaca gttgaaagaa tctgtagaaa ttaattgtac aagacccaac aacaatacaa 
    1561 ggaaaagtat acatatagga ccaggaagag cattttatac aacaggagac ataacaggag 
    1621 atacaagacg agcatattgc aacattagta gaacaaaatg gaatgacact ttaaatcaaa 
    1681 tagctacaaa attaaaagaa caatttggga ataataaaac aataatcttt agtccatcct 
    1741 caggagggga cccaggaatt gtaatgcaca gttttaattg tggaggggaa tttttctact 
    1801 gtaattcaac acaactgttt aatagtactt ggggttttaa tggtacttgg aattcaacac 
    1861 aatcaaatgg tggaaatgac aatatcacac tcccatgtag aataaaacaa attataaaca 
    1921 tgtggcaaga agtaggaaaa gcaatgtatg cccctcccat cagaggacaa attagatgtt 
    1981 catcaaatat tacagggcta atattaacaa gagatggtgg aaatagccac aataatgata 
    2041 acgagacctt tagacctgga ggaggagata tgagggacaa ttggagaagt gaattgtata 
    2101 aatataaagt agtaaaaatc gaaccattag gagtagcacc caccaaggca aagagaagag 
    2161 tggtgcagag agaaaaaaga gcagtgggag caataggagc tatgttcctt gggttcttgg 
    2221 gagcagcagg aagcactatg ggcgcagcgt caataacgct gacggtacag gccagactat 
    2281 tattgtctgg tatagtgcaa cagcagaaca acctgctgag ggctattgag gcgcaacagc 
    2341 atctgttgca actcacagtc tggggcatca agcagctcca ggcaagagtc ctggctatgg 
    2401 agagatacct aagggatcaa cagctcctag ggatttgggg ttgctctgga aaactcatct 
    2461 gcaccactgc tgtgccttgg aatgctagtt ggagtaataa atctttggat atgatttgga 
    2521 ataacatgac ctggatggag tgggaaagag agatcgacaa ctacacaggc ttaatataca 
    2581 cattaattga agaatcgcag aaccagcaag aaaagaatga acaagaatta ttagaattag 
    2641 ataagtgggc aagtttgtgg aattggtttg acataacaaa gtggctgtgg tatataaaaa 
    2701 tattcataat gatagtagga ggcttgatag gtttaagaat agtttttact gtactttcta 
    2761 tagtaaatag agttaggcag ggatactcac cattgtcgtt tcagacccac ctcccaaccc 
    2821 cgaggggacc cgacaggccc gaaggaatcg aagaagaagg tggagacaga gacagagaca 
    2881 gatccgtgcg attagtggac ggattcttga cacttttctg gaacgacctg cggagcctgt 
    2941 gcctcttcag ctaccaccgc ttgagagact tactcttgat tgtaacgagg actgtggaac 
    3001 ttctgggacg cagggggtgg gaaaccctca agtattggtg gaatctcctg cagtattgga 
    3061 gtcaggaact aaggaatagt gctgttagat tgcttaatgc cacagctata gcagtagctg 
    3121 aggggacaga tagggttata gaagtagtac taagaatttg tagggctatt ctccgcatac 
    3181 ctacaagaat aagacagggc ttggaaagga ctttgctata agactatggg tggagctatt 
    3241 tccatgaggc ggtccaggcc gtctggagat ctgcgcgaga gactcttgcg ggcgcgtgga 
    3301 gagacttatg ggagactctt aagagaggtg gaagatgaat acccgcaatc cccaggagga 
    3361 ctaggcaagg gctcgagctc actctcttgt gagggacaga aatacaatca gggacagtat 
    3421 atgaatactc catggagaaa cccagctgaa gagagaggaa aattagcata cagaaaacaa 
    3481 aatatgactt ggtaggggta tcagtgaggc caaaagttcc cctaagaaca atgagttaca 
    3541 aagtggcaat agacatgtct cattttataa aagaa
//
last modified: Tue May 31 10:56 2022


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