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LOCUS JQ775976 3612 bp RNA linear SYN 13-AUG-2012
DEFINITION Simian-Human immunodeficiency virus isolate DBJE.J11 vpr protein
(vpr), tat protein (tat), rev protein (rev), and envelope
glycoprotein (env) genes, complete cds; and nef protein (nef) gene,
partial cds
ACCESSION JQ775976
VERSION JQ775976.1 GI:399903630
KEYWORDS .
SOURCE Simian-Human immunodeficiency virus
ORGANISM Simian-Human immunodeficiency virus Viruses; Retro-transcribing
viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Primate
lentivirus group; unclassified Primate lentivirus group
REFERENCE 1 (bases 1 to 3612)
Show all sequences for reference 1
AUTHORS Gautam,R., Nishimura,Y., Lee,W.R., Donau,O., Buckler-White,A.,
Shingai,M., Sadjadpour,R., Schmidt,S.D., LaBranche,C.C.,
Keele,B.F., Montefiori,D., Mascola,J.R. and Martin,M.A.
TITLE Pathogenicity and Mucosal Transmissibility of the R5-Tropic
Simian/Human Immunodeficiency Virus SHIVAD8 in Rhesus Macaques:
Implications for Use in Vaccine Studies
JOURNAL J. Virol. 86 (16), 8516-8526 (2012)
PUBMED 22647691
REFERENCE 2 (bases 1 to 3612)
Show all sequences for reference 2
AUTHORS Gautam,R., Nishimura,Y., Lee,W.R., Donau,O., Buckler-White,A.,
Shingai,M., Sadjadpour,R., Smith,S.D., LeBranche,C.C., Keele,B.F.,
Montefiori,D., Mascola,J.R. and Martin,M.A.
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2012) AIDS and Cancer Virus Program,
SAIC-Frederick, National Cancer Institute, 1050 Boyles Street,
Frederick, MD 21702, USA
FEATURES Location/Qualifiers
source 1..3612
/organism="Simian-Human immunodeficiency virus"
/mol_type="other RNA"
/isolate="DBJE.J11"
/host="Macaca mulatta"
/db_xref="taxon:57667"
/country="USA"
/collection_date="07-May-2010"
gene 1..291
/gene="vpr"
CDS 1..291
/gene="vpr"
/codon_start="1"
/transl_table="1"
/product="vpr protein"
/protein_id="AFP54786.1"
/db_xref="GI:399903631"
/translation="MEERPPEDEGPQREPWNEWTLELLEELKNEAVRHFPRIWLHNLG
QHICETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRRRTRNGASRS"
gene 272..2907
/gene="tat"
CDS join(272..486,2817..2907)
/gene="tat"
/codon_start="1"
/transl_table="1"
/product="tat protein"
/protein_id="AFP54787.1"
/db_xref="GI:399903632"
/translation="MEPVDPRLEPWKHPGSQPRTACNNCYCKKCCFHCQVCFTRKGLG
ISYGRKKRRQRRRTPQGSQTHQLSLSKQPTSQPRGDPTGPKESKKKVETETETDPCD"
gene 411..3091
/gene="rev"
CDS join(411..486,2817..3091)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AFP54788.1"
/db_xref="GI:399903633"
/translation="MAGRSGDSDEELLKAVRLINFLYQSNPPPNPEGTRQARRNRRRR
WRQRQRQIRAISGRILDTFLERPAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGNPQV
LVESPAVLESGTKE"
gene 666..3233
/gene="env"
CDS 666..3233
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFP54789.1"
/db_xref="GI:399903634"
/translation="MKVKGIRKNYQHLWKWGIMLLGMLMICSAVENLWVTVYYGVPVW
KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLENVTENFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTDLNVTNTNNSSEEMKREMRNCSFNITTSI
RDKVKKDYALFYRLDVVPIDNENNSYRLINCNTSTITQACPKVSFEPIPIHYCTPAGF
AILKCKDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSSNFTDNT
KNIIVQLKESVEINCTRPNNNTRKSIHIGPGRAFYTTGDITGDTRRAYCNISRTKWNN
TLNQIATKLKEQFGNNKTIIFSPSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWSFN
GTWNSTQSNEGNDPITLPCRIRQIINMWQEVGKAMYAPPIKGQIRCSSNITGLILTRD
GGNHNSGNHTNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREK
RAVGAIGAMFLGFLGAAGSTMGAASITLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQ
LTVWGIKQLQARVLAMERYLRDQQLLGIWGCSGKLICTTAVPWNASWSNKTLDMIWNN
MTWMEWEREIDNYTDLIYTLIEESQNQQEKNERELLELDKWASLWNWFDITNWLWYIK
IFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGDRD
RDRSVRLVDGFLTLFWNDLRSLCLFSYHRLRDLLLIVTRTVELLGRRGWETLKYWWNL
LQYWSQELRNSAVSLLNATAIAVAEGTDRVIEVVLRIYRAILRIPTRIRQGLERTLL"
gene 3238..>3612
/gene="nef"
CDS 3238..>3612
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AFP54790.1"
/db_xref="GI:399903635"
/translation="MGGAISMRRSRPSGDLRERLLRARGETYGRLLREVEDEYPQSPG
GLGKGSSSLSCEGQKYNQGQYMNTPWRNPAEEREKLAYRKQNMDDIDEEDDDLVGVSV
RPKVPLRTMSYKVAIDMSHFIKE"
BASE COUNT 1281 a 614 c 859 g 858 t
ORIGIN
1 atggaagaaa gacctccaga agatgaagga ccacaaaggg aaccatggaa tgaatggaca
61 ctagagcttt tagaggaact taagaatgaa gctgttagac attttcctag gatatggctc
121 cataatctag gacaacatat ctgtgaaact tacggggata cttgggcagg agtggaagcc
181 ataataagaa ttctgcaaca actgctgttt attcatttca gaattgggtg tcaacatagc
241 agaataggca ttattcggag gagaacaaga aatggagcca gtagatccta gactagagcc
301 ctggaagcat ccaggaagcc agcctaggac tgcttgtaat aattgctatt gtaaaaagtg
361 ttgctttcat tgccaagttt gcttcacgag aaaaggctta ggcatctcct atggcaggaa
421 gaagcggaga cagcgacgaa gaactcctca aggcagtcag actcatcaac tttctctatc
481 aaagcagtaa gtagtaaatg taatgcaacc tttacaaata ttagcaatag tagcattagt
541 agcaataaca atactagcaa taggtgtgtg gaccatagta ttcatagaat ataggaaaat
601 attaagacaa agaaaaatag acaggttaat tgataggata acagaaagag cagaagacag
661 tggcaatgaa agtgaagggg atcaggaaga attatcaaca cttatggaaa tggggcatca
721 tgctcctcgg gatgttgatg atctgtagtg ctgtagaaaa tttgtgggtc acagtttatt
781 atggggtacc tgtgtggaaa gaagcaacca ccactctatt ttgtgcatca gatgctaaag
841 catatgatac agaggtacat aatgtttggg ccacacatgc ctgtgtaccc acagacccca
901 acccacaaga aatagtattg gaaaatgtga cagaaaattt taacatgtgg aaaaataaca
961 tggtagaaca gatgcatgag gatataatca gtttatggga tcaaagccta aagccatgtg
1021 taaaattaac cccactctgt gttactttaa attgcactga tttgaatgtt actaatacca
1081 ataatagtag tgaggaaatg aaaagagaaa tgagaaactg ctctttcaat atcaccacaa
1141 gcataagaga taaggtgaag aaagactatg cactttttta tagacttgat gtagtaccaa
1201 tagataatga gaataatagc tataggttga taaattgtaa tacctcaacc attacacagg
1261 cctgtccaaa ggtatccttt gagccaattc ccatacatta ttgtaccccg gctggttttg
1321 cgattctaaa gtgtaaagat aagaagttca atggaacagg gccatgtaaa aatgtcagca
1381 cagtacaatg tacacatgga attaggccag tagtgtcaac tcaactgctg ttaaatggca
1441 gtctagcaga agaagaggta gtgattagat ctagtaattt cacagacaat acaaaaaaca
1501 taatagtaca gttgaaagaa tctgtagaaa ttaattgtac aagacccaac aacaatacaa
1561 ggaaaagtat acatatagga ccaggaagag cattttatac aacaggagac ataacaggag
1621 atacaagacg agcatattgc aacattagta gaacaaaatg gaataacact ttaaatcaaa
1681 tagctacaaa attaaaagaa caatttggaa ataataaaac aataatcttt agtccatcct
1741 caggagggga cccagaaatt gtaatgcaca gttttaattg tggaggggaa tttttctact
1801 gtaattcaac acaactgttt aatagtactt ggagttttaa tggtacttgg aattcaacac
1861 aatcaaatga aggaaatgac cctatcacac tcccatgtag aataagacaa attataaaca
1921 tgtggcaaga agtaggaaaa gcaatgtatg cccctcccat caaaggacaa attagatgtt
1981 catcaaatat tacagggctg atattaacaa gagatggtgg aaaccacaat agtggaaacc
2041 acactaatga taccgagacc tttagacctg gaggaggaga tatgagggac aattggagaa
2101 gtgaattata taaatataaa gtagtaaaaa ttgaaccatt aggagtagca cccaccaagg
2161 caaagagaag agtggtgcag agagaaaaaa gagcagtggg agcaatagga gccatgttcc
2221 ttgggttctt gggagcagca ggaagcacta tgggcgcagc gtcaataacg ctgacggtac
2281 aggccagact attattgtct ggtatagtgc aacagcagaa caacctgctg agggctattg
2341 aggcgcaaca gcatctgttg caactcacag tctggggcat caagcagctc caggcaagag
2401 tcctggctat ggagagatac ctaagggatc aacagctcct agggatttgg ggttgctctg
2461 gaaaactcat ctgcaccact gctgtgcctt ggaatgctag ttggagtaat aaaactctgg
2521 atatgatttg gaataacatg acctggatgg agtgggaaag agaaatcgac aactacacag
2581 acttaatata cacattaatt gaagaatcgc agaaccagca agaaaagaat gaacgagaat
2641 tattagaatt agataagtgg gcaagtttgt ggaattggtt tgacataaca aattggctgt
2701 ggtatataaa aatattcata atgatagtag gaggcttgat aggtttaaga atagttttta
2761 ctgtactttc tatagtaaat agagttaggc agggatactc accattgtcg tttcagaccc
2821 acctcccaac cccgagggga cccgacaggc ccgaaggaat cgaagaagaa ggtggagaca
2881 gagacagaga cagatccgtg cgattagtgg acggattctt gacacttttc tggaacgacc
2941 tgcggagcct gtgcctcttc agctaccacc gcttgagaga cttactcttg attgtaacga
3001 ggactgtgga acttctggga cgcagggggt gggaaaccct caagtattgg tggaatctcc
3061 tgcagtattg gagtcaggaa ctaaggaata gtgctgttag cttgcttaat gccacagcta
3121 tagcagtagc tgaggggaca gatagggtta tagaagtagt actaagaatt tatagggcta
3181 ttctccgcat acctacaaga ataagacagg gcttggaaag gactttgcta taagactatg
3241 ggtggagcta tttccatgag gcggtccagg ccgtctggag atctgcgcga gagactcttg
3301 cgggcgcgtg gagagactta tgggagactc ttaagagagg tggaagatga atacccgcaa
3361 tccccaggag gactaggcaa gggctcgagc tcactctctt gtgagggaca gaaatacaat
3421 cagggacagt atatgaatac tccatggaga aacccagctg aagagagaga aaaattagca
3481 tacagaaaac aaaatatgga tgatatagat gaggaagatg atgacttggt aggggtatca
3541 gtgaggccaa aagttcccct aagaacaatg agttacaaag tggcaataga catgtctcat
3601 tttataaaag aa
//
last modified: Tue May 31 10:56 2022