HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    JQ775976		    3612 bp    RNA     linear	SYN 13-AUG-2012
DEFINITION  Simian-Human immunodeficiency virus isolate DBJE.J11 vpr protein
	    (vpr), tat protein (tat), rev protein (rev), and envelope
	    glycoprotein (env) genes, complete cds; and nef protein (nef) gene,
	    partial cds
ACCESSION   JQ775976
VERSION     JQ775976.1 GI:399903630
KEYWORDS    .
SOURCE	    Simian-Human immunodeficiency virus
  ORGANISM  Simian-Human immunodeficiency virus Viruses; Retro-transcribing
	    viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Primate
	    lentivirus group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 3612)
            Show all sequences for reference 1
  AUTHORS   Gautam,R., Nishimura,Y., Lee,W.R., Donau,O., Buckler-White,A.,
	    Shingai,M., Sadjadpour,R., Schmidt,S.D., LaBranche,C.C.,
	    Keele,B.F., Montefiori,D., Mascola,J.R. and Martin,M.A.
  TITLE     Pathogenicity and Mucosal Transmissibility of the R5-Tropic
	    Simian/Human Immunodeficiency Virus SHIVAD8 in Rhesus Macaques:
	    Implications for Use in Vaccine Studies
  JOURNAL   J. Virol. 86 (16), 8516-8526 (2012)
  PUBMED    22647691
REFERENCE   2 (bases 1 to 3612)
            Show all sequences for reference 2
  AUTHORS   Gautam,R., Nishimura,Y., Lee,W.R., Donau,O., Buckler-White,A.,
	    Shingai,M., Sadjadpour,R., Smith,S.D., LeBranche,C.C., Keele,B.F.,
	    Montefiori,D., Mascola,J.R. and Martin,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2012) AIDS and Cancer Virus Program,
	    SAIC-Frederick, National Cancer Institute, 1050 Boyles Street,
	    Frederick, MD 21702, USA
FEATURES             Location/Qualifiers
     source	     1..3612
		     /organism="Simian-Human immunodeficiency virus"
		     /mol_type="other RNA"
		     /isolate="DBJE.J11"
		     /host="Macaca mulatta"
		     /db_xref="taxon:57667"
		     /country="USA"
		     /collection_date="07-May-2010"
     gene	     1..291
		     /gene="vpr"
     CDS	     1..291
		     /gene="vpr"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpr protein"
		     /protein_id="AFP54786.1"
		     /db_xref="GI:399903631"
		     /translation="MEERPPEDEGPQREPWNEWTLELLEELKNEAVRHFPRIWLHNLG
		     QHICETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRRRTRNGASRS"
     gene	     272..2907
		     /gene="tat"
     CDS	     join(272..486,2817..2907)
		     /gene="tat"
		     /codon_start="1"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AFP54787.1"
		     /db_xref="GI:399903632"
		     /translation="MEPVDPRLEPWKHPGSQPRTACNNCYCKKCCFHCQVCFTRKGLG
		     ISYGRKKRRQRRRTPQGSQTHQLSLSKQPTSQPRGDPTGPKESKKKVETETETDPCD"
     gene	     411..3091
		     /gene="rev"
     CDS	     join(411..486,2817..3091)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AFP54788.1"
		     /db_xref="GI:399903633"
		     /translation="MAGRSGDSDEELLKAVRLINFLYQSNPPPNPEGTRQARRNRRRR
		     WRQRQRQIRAISGRILDTFLERPAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGNPQV
		     LVESPAVLESGTKE"
     gene	     666..3233
		     /gene="env"
     CDS	     666..3233
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFP54789.1"
		     /db_xref="GI:399903634"
		     /translation="MKVKGIRKNYQHLWKWGIMLLGMLMICSAVENLWVTVYYGVPVW
		     KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLENVTENFNMWKNNMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCTDLNVTNTNNSSEEMKREMRNCSFNITTSI
		     RDKVKKDYALFYRLDVVPIDNENNSYRLINCNTSTITQACPKVSFEPIPIHYCTPAGF
		     AILKCKDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSSNFTDNT
		     KNIIVQLKESVEINCTRPNNNTRKSIHIGPGRAFYTTGDITGDTRRAYCNISRTKWNN
		     TLNQIATKLKEQFGNNKTIIFSPSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWSFN
		     GTWNSTQSNEGNDPITLPCRIRQIINMWQEVGKAMYAPPIKGQIRCSSNITGLILTRD
		     GGNHNSGNHTNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREK
		     RAVGAIGAMFLGFLGAAGSTMGAASITLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQ
		     LTVWGIKQLQARVLAMERYLRDQQLLGIWGCSGKLICTTAVPWNASWSNKTLDMIWNN
		     MTWMEWEREIDNYTDLIYTLIEESQNQQEKNERELLELDKWASLWNWFDITNWLWYIK
		     IFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGDRD
		     RDRSVRLVDGFLTLFWNDLRSLCLFSYHRLRDLLLIVTRTVELLGRRGWETLKYWWNL
		     LQYWSQELRNSAVSLLNATAIAVAEGTDRVIEVVLRIYRAILRIPTRIRQGLERTLL"
     gene	     3238..>3612
		     /gene="nef"
     CDS	     3238..>3612
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AFP54790.1"
		     /db_xref="GI:399903635"
		     /translation="MGGAISMRRSRPSGDLRERLLRARGETYGRLLREVEDEYPQSPG
		     GLGKGSSSLSCEGQKYNQGQYMNTPWRNPAEEREKLAYRKQNMDDIDEEDDDLVGVSV
		     RPKVPLRTMSYKVAIDMSHFIKE"
BASE COUNT     1281 a	 614 c	  859 g    858 t
ORIGIN
       1 atggaagaaa gacctccaga agatgaagga ccacaaaggg aaccatggaa tgaatggaca 
      61 ctagagcttt tagaggaact taagaatgaa gctgttagac attttcctag gatatggctc 
     121 cataatctag gacaacatat ctgtgaaact tacggggata cttgggcagg agtggaagcc 
     181 ataataagaa ttctgcaaca actgctgttt attcatttca gaattgggtg tcaacatagc 
     241 agaataggca ttattcggag gagaacaaga aatggagcca gtagatccta gactagagcc 
     301 ctggaagcat ccaggaagcc agcctaggac tgcttgtaat aattgctatt gtaaaaagtg 
     361 ttgctttcat tgccaagttt gcttcacgag aaaaggctta ggcatctcct atggcaggaa 
     421 gaagcggaga cagcgacgaa gaactcctca aggcagtcag actcatcaac tttctctatc 
     481 aaagcagtaa gtagtaaatg taatgcaacc tttacaaata ttagcaatag tagcattagt 
     541 agcaataaca atactagcaa taggtgtgtg gaccatagta ttcatagaat ataggaaaat 
     601 attaagacaa agaaaaatag acaggttaat tgataggata acagaaagag cagaagacag 
     661 tggcaatgaa agtgaagggg atcaggaaga attatcaaca cttatggaaa tggggcatca 
     721 tgctcctcgg gatgttgatg atctgtagtg ctgtagaaaa tttgtgggtc acagtttatt 
     781 atggggtacc tgtgtggaaa gaagcaacca ccactctatt ttgtgcatca gatgctaaag 
     841 catatgatac agaggtacat aatgtttggg ccacacatgc ctgtgtaccc acagacccca 
     901 acccacaaga aatagtattg gaaaatgtga cagaaaattt taacatgtgg aaaaataaca 
     961 tggtagaaca gatgcatgag gatataatca gtttatggga tcaaagccta aagccatgtg 
    1021 taaaattaac cccactctgt gttactttaa attgcactga tttgaatgtt actaatacca 
    1081 ataatagtag tgaggaaatg aaaagagaaa tgagaaactg ctctttcaat atcaccacaa 
    1141 gcataagaga taaggtgaag aaagactatg cactttttta tagacttgat gtagtaccaa 
    1201 tagataatga gaataatagc tataggttga taaattgtaa tacctcaacc attacacagg 
    1261 cctgtccaaa ggtatccttt gagccaattc ccatacatta ttgtaccccg gctggttttg 
    1321 cgattctaaa gtgtaaagat aagaagttca atggaacagg gccatgtaaa aatgtcagca 
    1381 cagtacaatg tacacatgga attaggccag tagtgtcaac tcaactgctg ttaaatggca 
    1441 gtctagcaga agaagaggta gtgattagat ctagtaattt cacagacaat acaaaaaaca 
    1501 taatagtaca gttgaaagaa tctgtagaaa ttaattgtac aagacccaac aacaatacaa 
    1561 ggaaaagtat acatatagga ccaggaagag cattttatac aacaggagac ataacaggag 
    1621 atacaagacg agcatattgc aacattagta gaacaaaatg gaataacact ttaaatcaaa 
    1681 tagctacaaa attaaaagaa caatttggaa ataataaaac aataatcttt agtccatcct 
    1741 caggagggga cccagaaatt gtaatgcaca gttttaattg tggaggggaa tttttctact 
    1801 gtaattcaac acaactgttt aatagtactt ggagttttaa tggtacttgg aattcaacac 
    1861 aatcaaatga aggaaatgac cctatcacac tcccatgtag aataagacaa attataaaca 
    1921 tgtggcaaga agtaggaaaa gcaatgtatg cccctcccat caaaggacaa attagatgtt 
    1981 catcaaatat tacagggctg atattaacaa gagatggtgg aaaccacaat agtggaaacc 
    2041 acactaatga taccgagacc tttagacctg gaggaggaga tatgagggac aattggagaa 
    2101 gtgaattata taaatataaa gtagtaaaaa ttgaaccatt aggagtagca cccaccaagg 
    2161 caaagagaag agtggtgcag agagaaaaaa gagcagtggg agcaatagga gccatgttcc 
    2221 ttgggttctt gggagcagca ggaagcacta tgggcgcagc gtcaataacg ctgacggtac 
    2281 aggccagact attattgtct ggtatagtgc aacagcagaa caacctgctg agggctattg 
    2341 aggcgcaaca gcatctgttg caactcacag tctggggcat caagcagctc caggcaagag 
    2401 tcctggctat ggagagatac ctaagggatc aacagctcct agggatttgg ggttgctctg 
    2461 gaaaactcat ctgcaccact gctgtgcctt ggaatgctag ttggagtaat aaaactctgg 
    2521 atatgatttg gaataacatg acctggatgg agtgggaaag agaaatcgac aactacacag 
    2581 acttaatata cacattaatt gaagaatcgc agaaccagca agaaaagaat gaacgagaat 
    2641 tattagaatt agataagtgg gcaagtttgt ggaattggtt tgacataaca aattggctgt 
    2701 ggtatataaa aatattcata atgatagtag gaggcttgat aggtttaaga atagttttta 
    2761 ctgtactttc tatagtaaat agagttaggc agggatactc accattgtcg tttcagaccc 
    2821 acctcccaac cccgagggga cccgacaggc ccgaaggaat cgaagaagaa ggtggagaca 
    2881 gagacagaga cagatccgtg cgattagtgg acggattctt gacacttttc tggaacgacc 
    2941 tgcggagcct gtgcctcttc agctaccacc gcttgagaga cttactcttg attgtaacga 
    3001 ggactgtgga acttctggga cgcagggggt gggaaaccct caagtattgg tggaatctcc 
    3061 tgcagtattg gagtcaggaa ctaaggaata gtgctgttag cttgcttaat gccacagcta 
    3121 tagcagtagc tgaggggaca gatagggtta tagaagtagt actaagaatt tatagggcta 
    3181 ttctccgcat acctacaaga ataagacagg gcttggaaag gactttgcta taagactatg 
    3241 ggtggagcta tttccatgag gcggtccagg ccgtctggag atctgcgcga gagactcttg 
    3301 cgggcgcgtg gagagactta tgggagactc ttaagagagg tggaagatga atacccgcaa 
    3361 tccccaggag gactaggcaa gggctcgagc tcactctctt gtgagggaca gaaatacaat 
    3421 cagggacagt atatgaatac tccatggaga aacccagctg aagagagaga aaaattagca 
    3481 tacagaaaac aaaatatgga tgatatagat gaggaagatg atgacttggt aggggtatca 
    3541 gtgaggccaa aagttcccct aagaacaatg agttacaaag tggcaataga catgtctcat 
    3601 tttataaaag aa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.