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LOCUS	    JQ754194		    2580 bp    RNA     linear	VRL 21-MAR-2012
DEFINITION  HIV-1 isolate 19157834_3A7 from South Africa envelope glycoprotein
	    (env) gene, complete cds; nonfunctional vpu protein (vpu) gene,
	    partial sequence; rev protein (rev) gene, partial cds; and
	    nonfunctional tat protein (tat) gene, partial sequence
ACCESSION   JQ754194
VERSION     JQ754194.1 GI:380690772
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2580)
            Show all sequences for reference 1
  AUTHORS   Parrish,N., Wilen,C., Banks,L., Iyer,S., Pfaff,J.,
	    Salazar-Gonzalez,J., Salazar,M., Decker,J., Parrish,E., Berg,A.,
	    Hooper,J., Mahlokozera,T., Yuan,S., Coleman,C., Vermeulen,M.,
	    Ochsenbauer,C., Tilton,J., Permar,S., Kappes,J., Betts,M.,
	    Busch,M., Gao,F., Montefiori,D., Haynes,B., Shaw,G., Hahn,B. and
	    Doms,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2012) Theoretical Biology & Biophysics, Los
	    Alamos National Laboratory, T6 MS K710, Los Alamos, NM 87545, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Parrish,N.F., Wilen,C.B., Banks,L.B., Iyer,S.S., Pfaff,J.M.,
	    Salazar-Gonzalez,J.F., Salazar,M.G., Decker,J.M., Parrish,E.H.,
	    Berg,A., Hopper,J., Hora,B., Kumar,A., Mahlokozera,T., Yuan,S.,
	    Coleman,C., Vermeulen,M., Ding,H., Ochsenbauer,C., Tilton,J.C.,
	    Permar,S.R., Kappes,J.C., Betts,M.R., Busch,M.P., Gao,F.,
	    Montefiori,D., Haynes,B.F., Shaw,G.M., Hahn,B.H. and Doms,R.W.
  TITLE     Transmitted/Founder and Chronic Subtype C HIV-1 Use CD4 and CCR5
	    Receptors with Equal Efficiency and Are Not Inhibited by Blocking
	    the Integrin alpha4beta7
  JOURNAL   PLoS Pathog. 8 (5), E1002686 (2012)
  PUBMED    22693444
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV-1 Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 19157834 Patient Cohort
	    South African National Blood Service Fiebig stage 1 or 2 Patient
	    sex M Risk Factor not recorded Viral load 275423 Sample tissue
	    plasma Culture method uncultured Amplification Strategy SGA
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2580
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="19157834_3A7"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="2005"
		     /note="subtype: C"
     gene	     1..2580
		     /gene="env"
     CDS	     1..2580
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFD93463.1"
		     /db_xref="GI:380690774"
		     /translation="MRVMGMLRNCQQWWIWGILGFWMLINYNVGGNLWVTVYYGVPVW
		     KEAKTTLFCASDAKAYEREVHNVWATHACVPTDPNPQEMVLENVTENFNMWKNDMVDQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLKCGNVTKNNTVTTNDTLNGEIKNCSFNIPTEL
		     RDKKKNVSALFYSLDIVPLKNESENEYRLISCNTSTITQACPKVSFDPIPIHYCAPAG
		     YAILKCNNNTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAKEGIVIRSENLTNN
		     VKTIIVQFKTPVKIVCTRPNNNTRKSVRIGPGQTFYATGDIIGNIRQAHCNISEETWN
		     QTLQNLVTKLKEHFPNKTIQFKPSSGGDLEITTHSFNCRGEFFYCNTSKLFNSTYMAN
		     NTDVSNSTLNSTSNATITLPCRIKQIINMWQGVGRAMYAPPIAGNITCKSNITGVLLT
		     RDGGESNGTEEVFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTGAKRRVVEREKRAV
		     GIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVW
		     GIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKSQTDIWNNMTWM
		     QWDKEINNYTNTIYRLLEESQNQQEKNEKDLLALDSWNNLWNWFDITKWLWYIKIFIM
		     IVGGLIGLKIIFAVISIVNRVRQGYSPLSFQTLIPQPRGRPDRLGRIEEEGGEQDSDR
		     SVRLVNGFLALAWEDLRSLCLFSYRLLKDFILVVVRAVELLGRSSLRGIQRGWEALKY
		     LGSLGQYWGLELKKSAISLLDTIAIAVAEGTDRIIEVVLRIWRALCRIPTRIRQGFEA
		     ALL"
     gene	     <1..83
		     /gene="vpu"
     misc_feature    <1..83
		     /gene="vpu"
		     /note="nonfunctional vpu protein due to mutation"
     gene	     <2140..2390
		     /gene="rev"
     CDS	     <2140..2390
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AFD93462.1"
		     /db_xref="GI:380690773"
		     /translation="PYPTAEGTTRQARKNRRRRWRARQRQIREISERILSSCLGRSAE
		     PVPFQLPPIERLHIGGSESGGTSGTQQSQGNTEGVGSP"
     gene	     <2140..2233
		     /gene="tat"
     misc_feature    <2140..2233
		     /gene="tat"
		     /note="nonfunctional tat protein due to mutation"
BASE COUNT	918 a	 424 c	  604 g    634 t
ORIGIN
       1 atgagagtga tggggatgtt gaggaattgt caacaatggt ggatatgggg aatcttaggc 
      61 ttttggatgc taattaatta taatgtaggg gggaacttgt gggtcacagt ttattatggg 
     121 gtacctgtgt ggaaagaagc aaaaactacg ctattctgtg catcagatgc taaagcatat 
     181 gagagagagg tgcataatgt ctgggccaca catgcttgtg tacccacaga ccccaaccca 
     241 caagaaatgg ttttggaaaa tgtaacagaa aattttaaca tgtggaaaaa tgacatggtg 
     301 gatcagatgc atgaggatat aatcagttta tgggaccaaa gcctaaagcc atgtgtaaaa 
     361 ttgaccccac tctgtgtcac tttaaaatgt ggaaatgtta ccaaaaataa tactgttacc 
     421 accaatgata ccctgaatgg agaaataaaa aattgctctt tcaatatacc cacagagtta 
     481 agagataaga agaagaatgt atctgcactt ttttatagtc ttgatatagt accacttaag 
     541 aatgagagtg agaatgagta taggttaata agttgtaaca cctcaaccat aacacaagcc 
     601 tgtccaaagg tcagttttga cccaattcct atacattatt gtgctccagc tggttatgcg 
     661 attctaaaat gtaataataa tacattcaat ggaacaggac catgcaataa tgtcagcaca 
     721 gtacaatgta cacatggaat taagccagtg gtatcaactc aattactgtt aaatggtagt 
     781 ttagcaaaag aaggaatagt aattagatct gaaaatctga caaataatgt taaaacaata 
     841 atagtacagt ttaaaacacc tgtaaagatt gtgtgtacaa ggcccaacaa taatacaaga 
     901 aaaagtgtga ggataggacc aggacaaaca ttctatgcga caggagacat aataggaaat 
     961 ataagacaag cacattgtaa cattagtgaa gagacatgga atcaaactct acaaaattta 
    1021 gtaacaaaat taaaagaaca cttccctaat aagacaatac aatttaaacc atcctcagga 
    1081 ggggatctag aaattacaac gcatagcttt aattgtagag gagaattttt ctattgcaat 
    1141 acatcaaaac tgttcaatag tacatacatg gctaataata cagacgtgtc taatagtact 
    1201 ttaaatagta cttcaaatgc aaccatcaca ctcccatgca gaataaaaca aattataaac 
    1261 atgtggcagg gggtaggacg ggcaatgtat gcccctccca ttgcaggaaa cataacatgt 
    1321 aagtcaaata tcacaggagt actattgaca cgtgatgggg gagaaagcaa tgggacagaa 
    1381 gaagtcttca gacctggagg aggagatatg agggacaatt ggagaagtga attatataag 
    1441 tataaagtgg tagaaattaa gccattagga atagcaccca ctggggcaaa aaggagagtg 
    1501 gtggagagag aaaaaagagc agtaggaata ggagctgtgt tccttgggtt cttgggagca 
    1561 gcaggaagca ctatgggcgc agcatcaata acgctgacgg tacaggccag acaattgttg 
    1621 tctggtatag tgcaacagca aagcaatttg ctgagggcca tagaggcgca acaacatttg 
    1681 ttgcaactca cggtctgggg cattaagcag cttcagacaa gagtcctggc tatagaaaga 
    1741 tacctaaagg atcaacagct cctaggaatt tggggctgct ctggaaaact catctgcacc 
    1801 actaatgtgc cttggaactc cagttggagt aataaatctc aaacagatat ttggaataac 
    1861 atgacttgga tgcagtggga taaagaaatt aataattaca caaacacaat atacaggctg 
    1921 cttgaagaat cgcaaaacca gcaagaaaaa aatgaaaagg atttactagc attggacagt 
    1981 tggaacaatc tgtggaattg gtttgacata acaaaatggc tgtggtatat aaaaatattc 
    2041 ataatgatag taggaggttt gatagggtta aaaataattt ttgctgtgat ctctatagtg 
    2101 aatagagtta ggcagggata ctcacctttg tcgtttcaga cccttatccc acagccgagg 
    2161 ggacgacccg acaggctcgg aagaatcgaa gaagaaggtg gagagcaaga cagcgacaga 
    2221 tccgtgagat tagtgaacgg attcttagct cttgcctggg aagatctgcg gagcctgtgc 
    2281 cttttcagct accgcctatt gaaagacttc atattggtgg tagtgagagc ggtggaactt 
    2341 ctgggacgca gcagtctcag gggaatacag agggggtggg aagcccttaa gtatctggga 
    2401 agtcttggac agtattgggg tctggaacta aaaaagagtg ctattagtct gcttgatacc 
    2461 atagcaatag cagtagctga aggaacagat aggattatag aagtagtact aagaatttgg 
    2521 agagctctct gccgcatacc tacaagaata agacagggct ttgaagcagc attactataa 
//
last modified: Tue May 31 10:56 2022


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