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LOCUS	    JQ753763		    2607 bp    RNA     linear	VRL 13-JUL-2012
DEFINITION  HIV-1 isolate 20258279_3G9 from South Africa envelope glycoprotein
	    (env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
	    and tat protein (tat) genes, partial cds
ACCESSION   JQ753763
VERSION     JQ753763.1 GI:380691406
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2607)
            Show all sequences for reference 1
  AUTHORS   Parrish,N.F., Wilen,C.B., Banks,L.B., Iyer,S.S., Pfaff,J.M.,
	    Salazar-Gonzalez,J.F., Salazar,M.G., Decker,J.M., Parrish,E.H.,
	    Berg,A., Hopper,J., Hora,B., Kumar,A., Mahlokozera,T., Yuan,S.,
	    Coleman,C., Vermeulen,M., Ding,H., Ochsenbauer,C., Tilton,J.C.,
	    Permar,S.R., Kappes,J.C., Betts,M.R., Busch,M.P., Gao,F.,
	    Montefiori,D., Haynes,B.F., Shaw,G.M., Hahn,B.H. and Doms,R.W.
  TITLE     Transmitted/Founder and Chronic Subtype C HIV-1 Use CD4 and CCR5
	    Receptors with Equal Efficiency and Are Not Inhibited by Blocking
	    the Integrin alpha4beta7
  JOURNAL   PLoS Pathog. 8 (5), E1002686 (2012)
  PUBMED    22693444
REFERENCE   2 (bases 1 to 2607)
            Show all sequences for reference 2
  AUTHORS   Parrish,N., Wilen,C., Banks,L., Iyer,S., Pfaff,J.,
	    Salazar-Gonzalez,J., Salazar,M., Decker,J., Parrish,E., Berg,A.,
	    Hooper,J., Mahlokozera,T., Yuan,S., Coleman,C., Vermeulen,M.,
	    Ochsenbauer,C., Tilton,J., Permar,S., Kappes,J., Betts,M.,
	    Busch,M., Gao,F., Montefiori,D., Haynes,B., Shaw,G., Hahn,B. and
	    Doms,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2012) Theoretical Biology and Biophysics, Los
	    Alamos National Laboratory, T6 MS K710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV-1 Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 20258279 Patient Cohort
	    South African National Blood Service Patient health status acute
	    infection EIA- WB indeterminate Patient sex F Viral load 281838
	    Sample tissue plasma Culture method uncultured Amplification
	    Strategy SGA ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2607
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="20258279_3G9"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="2007"
		     /note="subtype: C"
     gene	     1..2607
		     /gene="env"
     CDS	     1..2607
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFD93955.1"
		     /db_xref="GI:380691410"
		     /translation="MRVMEMWRNCQQWWIWVILGFWMLMSCNTENLWVTVYYGVPVWR
		     EAKTTLFCASDAKGYEKEVHNVWATHACVPTDPNPHELVLKNVTENFNMWKNDMVDQM
		     HEDIISLWDQSLKPCVKLTPLCVTLHCSDATYKNSNASGTYNNNSASGDVTNIPEMKN
		     CSFNITTEVRDKEKKEYALFYRIDIVPLNEGSSNSSSNFSEYRLINCNTSAITQACPK
		     VSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCTNVSTVQCTHGIKPVVSTQLLLNGSL
		     AEEEIIIRSENLTDNAKTIIVHLNDSVEIVCTRPGNNTRKSMRIGPGQTFYATGEIIG
		     NIREAHCNISKQKWNETMQKVAKKLREHFPNKTIVFNSSSGGDLEITTHSFNCRGEFF
		     YCNTSGLFNITFNGTDIAYNTPNASENITLPCRIKQIINMWQRVGRAMYAPPIAGNIT
		     CKSNITGLLLTRDGGSNSTGTEIFRPGGGDMRDNWRSELYKYKVVEVKPLGIAPTTAR
		     RRVVQREKRAALGAVLLGFLGAAGSTMGAASVALTVQARQLLSGIVQQQSNLLRAIEA
		     QHHLLQLTVWGIKQLQARVLALERYLKDQQLLGLWGCSGKIICTTALPWNGSWSNKSY
		     NDIWNNMTWMEWEREIDNYTNIIYGLLEDSQNQQEKNEQDLLALDSWNNLWNWFSITK
		     WLWYIRIFIMIVGGLIGLRIVFAVLSVVNRVRQGYSPLSFQTLTPNPRGPDRPGRIEE
		     EGGEQDRDRSVRLVSGFLALFWDDLRSLCLFSYHRLRDLLLIAARAAELLGRSSLKGL
		     QRGWEILKYLGSLIQYWGLEVKKSAINLLDTLAIAVAERTDRIIEVTQRICRAILSIP
		     RRIRQGFEAALQ"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AFD93954.1"
		     /db_xref="GI:380691409"
		     /translation="ESDGDVEELSTMVDMGHLRLLDANEL"
     gene	     <2170..2417
		     /gene="rev"
     CDS	     <2170..2417
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AFD93953.1"
		     /db_xref="GI:380691408"
		     /translation="PYPKPEGTRQARKNRRRRWRTRQRQIRAISERILGSLLGRPTEP
		     VPFQLPPIERLTLDCSESSGTSGTQQPQGTTEGVGNP"
     gene	     <2170..2260
		     /gene="tat"
     CDS	     <2170..2260
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AFD93952.1"
		     /db_xref="GI:380691407"
		     /translation="PLPQTRGDPTGPEESKKKVENKTETDPCD"
BASE COUNT	907 a	 447 c	  615 g    638 t
ORIGIN
       1 atgagagtga tggagatgtg gaggaattgt caacaatggt ggatatgggt catcttaggc 
      61 ttttggatgc taatgagttg taatacagag aacttgtggg ttacagtcta ttatggggta 
     121 cctgtgtgga gagaagcaaa aactactcta ttttgtgcat cagatgctaa aggatatgaa 
     181 aaggaggtgc ataatgtctg ggctacacat gcctgtgtac ccacagaccc caacccacat 
     241 gaattggttt tgaaaaatgt gacagagaat tttaacatgt ggaaaaatga catggtagat 
     301 cagatgcatg aggatataat cagtctatgg gatcaaagcc taaagccatg tgtaaaattg 
     361 accccactct gtgtcactct acactgtagt gatgctacct acaaaaatag taatgctagt 
     421 ggtacctaca ataataatag tgctagtggt gatgttacca acataccgga aatgaaaaat 
     481 tgctctttca atataaccac agaggtaaga gataaggaaa agaaagaata tgcacttttt 
     541 tatagaattg atatagtacc acttaatgag ggtagtagca actctagtag caactttagt 
     601 gagtatagat taataaattg taatacctca gccataacac aagcctgtcc aaaggtctct 
     661 tttgacccaa ttcctataca ttattgtgcg cctgctggtt atgcgattct aaagtgcaat 
     721 aataagacat tcaatggaac aggaccatgc acaaatgtca gcactgtaca atgcacacat 
     781 ggaattaagc cagtggtatc aactcaacta ctgttaaatg gcagcctagc agaagaagag 
     841 ataataatta gaagtgaaaa tctgacagac aatgccaaaa caataatagt acatcttaat 
     901 gactctgtag agattgtgtg tacaagaccc ggcaataata caagaaaaag tatgagaata 
     961 ggaccagggc aaacattcta tgcaacagga gagataatag gaaatataag agaagcacat 
    1021 tgtaacatta gtaaacagaa atggaatgaa actatgcaaa aggtagctaa aaaattaaga 
    1081 gaacacttcc ctaataaaac aatagtattt aattcatcct caggaggaga cctagagatt 
    1141 acaacacata gttttaattg tagaggagaa tttttctatt gcaatacatc aggcctgttt 
    1201 aatattacgt tcaatggtac agacatagct tataatacac caaatgcttc agaaaacata 
    1261 accctcccat gtagaataaa acaaattata aacatgtggc agagggtagg acgagcaatg 
    1321 tatgcccctc ccattgcagg aaacataaca tgtaaatcaa atatcacagg actactcttg 
    1381 acacgtgatg gagggagcaa tagtacaggg acagaaatat tcagacctgg aggaggagat 
    1441 atgagggata attggagaag tgaattatat aaatataaag tagtagaagt taaaccatta 
    1501 ggaatagcac ccactactgc aagaaggaga gtggtgcaga gagaaaaaag agcagcattg 
    1561 ggagctgtgc tcttggggtt cttaggagca gcaggaagca ctatgggcgc ggcgtcggtg 
    1621 gcgctgacgg tacaggccag gcaattattg tctggtatag tgcaacagca aagcaatttg 
    1681 ctgagagcta tagaggcaca acaccatttg ttgcaactca cagtctgggg cattaagcag 
    1741 ctccaggcaa gagtcctggc tctggaaaga tacctaaaag atcaacagct cctaggactt 
    1801 tggggctgct ctggaaaaat catctgcacc actgctttgc cttggaatgg tagttggagt 
    1861 aataaatctt acaacgatat ttggaacaat atgacctgga tggagtggga aagagaaatt 
    1921 gataattaca caaacataat atacgggttg cttgaagact cacagaacca gcaggagaaa 
    1981 aatgaacaag atttactagc attggacagc tggaacaatc tgtggaattg gtttagcata 
    2041 acaaagtggc tgtggtatat aagaatattc ataatgatag taggaggctt aataggttta 
    2101 agaatagttt ttgctgtgct ttctgtagtg aatagagtta ggcagggata ctcacctttg 
    2161 tcatttcaga cccttacccc aaacccgagg ggacccgaca ggcccggaag aatcgaagaa 
    2221 gaaggtggag aacaagacag agacagatcc gtgcgattag tgagcggatt cttggctctc 
    2281 ttctgggacg acctacggag cctgtgcctt ttcagctacc accgattgag agacttactc 
    2341 ttgattgcag cgagagcagc ggaacttctg ggacgcagca gcctcaaggg actacagagg 
    2401 gggtgggaaa tccttaagta cctgggaagt ctgatacagt attggggtct agaggtaaaa 
    2461 aagagtgcta ttaacctgct tgatacctta gcaatagcag tagctgagag aacagatagg 
    2521 attatagaag tgacacaaag aatttgtaga gctatcctta gcatacctag aagaataaga 
    2581 cagggctttg aagcagcttt gcaatag
//
last modified: Tue May 31 10:56 2022


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