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LOCUS	    JQ744158		    2692 bp    DNA     linear	VRL 02-FEB-2013
DEFINITION  Simian immunodeficiency virus isolate DD84.WK63.P2B7 from USA rev
	    protein (rev) gene, complete cds; tat protein (tat) gene, partial
	    cds; and nonfunctional envelope glycoprotein (env) gene, complete
	    sequence
ACCESSION   JQ744158
VERSION     JQ744158.1 GI:444175291
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2692)
            Show all sequences for reference 1
  AUTHORS   Breed,M.W., Jordan,A.P., Aye,P.P., Lichtveld,C.F., Midkiff,C.C.,
	    Schiro,F.R., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.G.,
	    Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
	    Keele,B.F., Hoxie,J.A. and Lackner,A.A.
  TITLE     Loss of a tyrosine-dependent trafficking motif in the simian
	    immunodeficiency virus envelope cytoplasmic tail spares mucosal CD4
	    cells but does not prevent disease progression
  JOURNAL   J. Virol. 87 (3), 1528-1543 (2013)
  PUBMED    23152518
REFERENCE   2 (bases 1 to 2692)
            Show all sequences for reference 2
  AUTHORS   Breed,M.W., Jordan,A.P.O., Aye,P.P., Lichtveld,C.F., Midkiff,C.,
	    Schiro,F., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.,
	    Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
	    Keele,B.F., Hoxie,J.A. and Lackner,A.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2012) AIDS and Cancer Virus Program,
	    SAIC-Frederick, Inc., 1050 Boyles Street, Frederick, MD 21702, USA
FEATURES             Location/Qualifiers
     source	     1..2692
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="DD84.WK63.P2B7"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
     gene	     1..2508
		     /gene="rev"
     CDS	     join(1..70,2255..2508)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AGD81505.1"
		     /db_xref="GI:444175292"
		     /translation="MSNREREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
		     RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTEDS
		     RSPQD"
     gene	     <1..2351
		     /gene="tat"
     CDS	     join(<1..70,2255..2351)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AGD81506.1"
		     /db_xref="GI:444175293"
		     /translation="EQSRKRRRTPKKAKANTSSASNKPISNRTRHCQPEKAKKETVEK
		     AVATAPGLGR"
     gene	     77..2692
		     /gene="env"
     misc_feature    77..2692
		     /gene="env"
		     /note="nonfunctional envelope glycoprotein due to
		     mutation"
BASE COUNT	860 a	 512 c	  652 g    668 t
ORIGIN
       1 atgagcaatc gcgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg 
      61 catcaaacaa gtaagtatgg ggtgtcttgg gaatcagctg cttatcgcca tcttgctttt 
     121 aagtgtctat gggacctatt gtactctata tgtcacagtc ttttatggtg taccagcttg 
     181 gaggaatgcg acaattcccc tcttttgtgc aaccaagaat agggatactt agggaacaac 
     241 tcagtgccta ccagataatg gtgattattc agaaatggcc cttaatgtta cagaaagctt 
     301 tgatgcctgg aataatacag tcacagaaca ggcaatagag gatgtatggc aactctttga 
     361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa 
     421 aagtgagaca gataaatggg gattgacaaa atcaataaca acaacagcat caacaacatc 
     481 aacgacagca tcagcaaaag tagacatggt caatgagact agttcttgta tagcccagga 
     541 taattgcaca ggcttggaac aagagcaaat gataagctgt aaattcaaca tgacagggtt 
     601 aaaaagagac aagaaaaagg agtacaatga aacttggtac tctgcagatt tggtatgtga 
     661 acaagggaat aacactggta atgaaagtag atgttacatg aaccactgta acacttctgt 
     721 tatccaagag tcttgtgaca aacattattg ggatgctatt agatttaggt attgtgcacc 
     781 tccaggttat gctttgctta gatgtaatga cacaaattat tcaggcttta tgcctaaatg 
     841 ttctaaggtg gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt 
     901 tggctttaat ggaactagag cagaaaatag aacttatatt tactggcatg gtagggataa 
     961 taggactata attagtttaa ataagtatta taatctaaca atgaaatgta gaagaccagg 
    1021 gaataagaca gttttaccag tcaccattat gtctggattg gttttccact cacaaccaat 
    1081 caatgatagg ccaaagcagg catggtgttg gtttggagga gaatggaagg atgcaataaa 
    1141 agaggtgaag cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa 
    1201 aatcaatttg acggctcctg gaggaggaga tccggaagtt accttcatgt ggacaaattg 
    1261 cagaggagag ttcctctact gtaaaatgga ttggtttcta aattaggtag aagataggaa 
    1321 tacagctagc cataaaagga attacgtgcc atgtcatatt agacaaataa tcaacacttg 
    1381 gcataaagta ggcaaaaatg tttatttgcc tccaagagag ggagacctca cgtgtaactc 
    1441 cacagtgacc agtctcatag caaacataga ttggattgat ggaaaccaaa ctaatatcac 
    1501 catgagtgca gaggtggcag aactgtatcg attggaattg ggagattata aattagtaga 
    1561 gatcactcca attggcttgg cccccacagg tgtgaagagg tacactactg gtggcacctc 
    1621 aagaaataaa agaggggtct ttgtgctagg gttcttgggt tttctcgcaa cggcaggttc 
    1681 tgcaatgggc gcggcgtcgt tgacgctgac cgctcagtcc cgaactttat tggctgggat 
    1741 agtgcagcaa cagcaacagc tgttggacgt ggtcaagaga caacaagaat tgttgcgact 
    1801 gaccgtctgg ggaacaaaga acctccagac taaggtcact gccatcgaga agtacttaaa 
    1861 ggaccaggcg cagctgaatg cttggggatg tgcgtttaga caagtctgcc acactactgt 
    1921 accatggcca aatgcaagtc taacaccaga gtggaacaat gagacttggc aagagtagga 
    1981 gcgaaaggtt gacttcttgg aagaaaatat aacagccctc ctagaggagg cacaaattca 
    2041 acaagagaag aacatgtatg aattacaaaa gttgaatagc tgggatgtgt ttggcaattg 
    2101 gtttgacctt gcttcttgga taaagtatat acaatatgga gtttatatag ttgtaggagt 
    2161 aatactgtta agaatagtga tctgtatagt gcaaatgcta gctaagttca ggcagaggcc 
    2221 agtgttctct tccccaccct cttatttcca gcagacccat atccaacagg acccggcact 
    2281 gccaaccaga gaaggcaaag aaggagacgg tggagaaggc ggtggcaaca gctcctggcc 
    2341 ttggcagata gaatatattc atttcctgat ccgccaactg atacgcctct tgacttggct 
    2401 attcagcaac tgcagaacct tgctatcgag agtataccag atcctccaac caatactcca 
    2461 gaggctctct gcgaccctac agaggattcg agaagtcctc aggactgaac tgacctacct 
    2521 acaatatggg tggagctatt tccatgaggc ggtccaggcc ggctggagat ctgcgacaga 
    2581 gactcttgcg ggcgcgtggg gagacttata ggagactctt aggagaggtg gaagatggat 
    2641 actcgcaatc cccaggagga ttaggcaagg gcttgagctc actctcttgt ga
//
last modified: Tue May 31 10:56 2022


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