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LOCUS JQ744158 2692 bp DNA linear VRL 02-FEB-2013
DEFINITION Simian immunodeficiency virus isolate DD84.WK63.P2B7 from USA rev
protein (rev) gene, complete cds; tat protein (tat) gene, partial
cds; and nonfunctional envelope glycoprotein (env) gene, complete
sequence
ACCESSION JQ744158
VERSION JQ744158.1 GI:444175291
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2692)
Show all sequences for reference 1
AUTHORS Breed,M.W., Jordan,A.P., Aye,P.P., Lichtveld,C.F., Midkiff,C.C.,
Schiro,F.R., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.G.,
Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
Keele,B.F., Hoxie,J.A. and Lackner,A.A.
TITLE Loss of a tyrosine-dependent trafficking motif in the simian
immunodeficiency virus envelope cytoplasmic tail spares mucosal CD4
cells but does not prevent disease progression
JOURNAL J. Virol. 87 (3), 1528-1543 (2013)
PUBMED 23152518
REFERENCE 2 (bases 1 to 2692)
Show all sequences for reference 2
AUTHORS Breed,M.W., Jordan,A.P.O., Aye,P.P., Lichtveld,C.F., Midkiff,C.,
Schiro,F., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.,
Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
Keele,B.F., Hoxie,J.A. and Lackner,A.A.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2012) AIDS and Cancer Virus Program,
SAIC-Frederick, Inc., 1050 Boyles Street, Frederick, MD 21702, USA
FEATURES Location/Qualifiers
source 1..2692
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="DD84.WK63.P2B7"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
gene 1..2508
/gene="rev"
CDS join(1..70,2255..2508)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AGD81505.1"
/db_xref="GI:444175292"
/translation="MSNREREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTEDS
RSPQD"
gene <1..2351
/gene="tat"
CDS join(<1..70,2255..2351)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="AGD81506.1"
/db_xref="GI:444175293"
/translation="EQSRKRRRTPKKAKANTSSASNKPISNRTRHCQPEKAKKETVEK
AVATAPGLGR"
gene 77..2692
/gene="env"
misc_feature 77..2692
/gene="env"
/note="nonfunctional envelope glycoprotein due to
mutation"
BASE COUNT 860 a 512 c 652 g 668 t
ORIGIN
1 atgagcaatc gcgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg
61 catcaaacaa gtaagtatgg ggtgtcttgg gaatcagctg cttatcgcca tcttgctttt
121 aagtgtctat gggacctatt gtactctata tgtcacagtc ttttatggtg taccagcttg
181 gaggaatgcg acaattcccc tcttttgtgc aaccaagaat agggatactt agggaacaac
241 tcagtgccta ccagataatg gtgattattc agaaatggcc cttaatgtta cagaaagctt
301 tgatgcctgg aataatacag tcacagaaca ggcaatagag gatgtatggc aactctttga
361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa
421 aagtgagaca gataaatggg gattgacaaa atcaataaca acaacagcat caacaacatc
481 aacgacagca tcagcaaaag tagacatggt caatgagact agttcttgta tagcccagga
541 taattgcaca ggcttggaac aagagcaaat gataagctgt aaattcaaca tgacagggtt
601 aaaaagagac aagaaaaagg agtacaatga aacttggtac tctgcagatt tggtatgtga
661 acaagggaat aacactggta atgaaagtag atgttacatg aaccactgta acacttctgt
721 tatccaagag tcttgtgaca aacattattg ggatgctatt agatttaggt attgtgcacc
781 tccaggttat gctttgctta gatgtaatga cacaaattat tcaggcttta tgcctaaatg
841 ttctaaggtg gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt
901 tggctttaat ggaactagag cagaaaatag aacttatatt tactggcatg gtagggataa
961 taggactata attagtttaa ataagtatta taatctaaca atgaaatgta gaagaccagg
1021 gaataagaca gttttaccag tcaccattat gtctggattg gttttccact cacaaccaat
1081 caatgatagg ccaaagcagg catggtgttg gtttggagga gaatggaagg atgcaataaa
1141 agaggtgaag cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa
1201 aatcaatttg acggctcctg gaggaggaga tccggaagtt accttcatgt ggacaaattg
1261 cagaggagag ttcctctact gtaaaatgga ttggtttcta aattaggtag aagataggaa
1321 tacagctagc cataaaagga attacgtgcc atgtcatatt agacaaataa tcaacacttg
1381 gcataaagta ggcaaaaatg tttatttgcc tccaagagag ggagacctca cgtgtaactc
1441 cacagtgacc agtctcatag caaacataga ttggattgat ggaaaccaaa ctaatatcac
1501 catgagtgca gaggtggcag aactgtatcg attggaattg ggagattata aattagtaga
1561 gatcactcca attggcttgg cccccacagg tgtgaagagg tacactactg gtggcacctc
1621 aagaaataaa agaggggtct ttgtgctagg gttcttgggt tttctcgcaa cggcaggttc
1681 tgcaatgggc gcggcgtcgt tgacgctgac cgctcagtcc cgaactttat tggctgggat
1741 agtgcagcaa cagcaacagc tgttggacgt ggtcaagaga caacaagaat tgttgcgact
1801 gaccgtctgg ggaacaaaga acctccagac taaggtcact gccatcgaga agtacttaaa
1861 ggaccaggcg cagctgaatg cttggggatg tgcgtttaga caagtctgcc acactactgt
1921 accatggcca aatgcaagtc taacaccaga gtggaacaat gagacttggc aagagtagga
1981 gcgaaaggtt gacttcttgg aagaaaatat aacagccctc ctagaggagg cacaaattca
2041 acaagagaag aacatgtatg aattacaaaa gttgaatagc tgggatgtgt ttggcaattg
2101 gtttgacctt gcttcttgga taaagtatat acaatatgga gtttatatag ttgtaggagt
2161 aatactgtta agaatagtga tctgtatagt gcaaatgcta gctaagttca ggcagaggcc
2221 agtgttctct tccccaccct cttatttcca gcagacccat atccaacagg acccggcact
2281 gccaaccaga gaaggcaaag aaggagacgg tggagaaggc ggtggcaaca gctcctggcc
2341 ttggcagata gaatatattc atttcctgat ccgccaactg atacgcctct tgacttggct
2401 attcagcaac tgcagaacct tgctatcgag agtataccag atcctccaac caatactcca
2461 gaggctctct gcgaccctac agaggattcg agaagtcctc aggactgaac tgacctacct
2521 acaatatggg tggagctatt tccatgaggc ggtccaggcc ggctggagat ctgcgacaga
2581 gactcttgcg ggcgcgtggg gagacttata ggagactctt aggagaggtg gaagatggat
2641 actcgcaatc cccaggagga ttaggcaagg gcttgagctc actctcttgt ga
//
last modified: Tue May 31 10:56 2022