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LOCUS	    JQ744138		    2719 bp    DNA     linear	VRL 02-FEB-2013
DEFINITION  Simian immunodeficiency virus isolate EC51.wk95.P5G11 from USA rev
	    protein (rev) gene, complete cds; tat protein (tat) gene, partial
	    cds; and envelope glycoprotein (env) gene, complete cds
ACCESSION   JQ744138
VERSION     JQ744138.1 GI:444175214
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2719)
            Show all sequences for reference 1
  AUTHORS   Breed,M.W., Jordan,A.P., Aye,P.P., Lichtveld,C.F., Midkiff,C.C.,
	    Schiro,F.R., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.G.,
	    Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
	    Keele,B.F., Hoxie,J.A. and Lackner,A.A.
  TITLE     Loss of a tyrosine-dependent trafficking motif in the simian
	    immunodeficiency virus envelope cytoplasmic tail spares mucosal CD4
	    cells but does not prevent disease progression
  JOURNAL   J. Virol. 87 (3), 1528-1543 (2013)
  PUBMED    23152518
REFERENCE   2 (bases 1 to 2719)
            Show all sequences for reference 2
  AUTHORS   Breed,M.W., Jordan,A.P.O., Aye,P.P., Lichtveld,C.F., Midkiff,C.,
	    Schiro,F., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.,
	    Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
	    Keele,B.F., Hoxie,J.A. and Lackner,A.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2012) AIDS and Cancer Virus Program,
	    SAIC-Frederick, Inc., 1050 Boyles Street, Frederick, MD 21702, USA
FEATURES             Location/Qualifiers
     source	     1..2719
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="EC51.wk95.P5G11"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
     gene	     1..2535
		     /gene="rev"
     CDS	     join(1..70,2282..2535)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AGD81448.1"
		     /db_xref="GI:444175215"
		     /translation="MSNHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
		     RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPGALCDPTGDS
		     RSPQD"
     gene	     <1..2378
		     /gene="tat"
     CDS	     join(<1..70,2282..2378)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AGD81449.1"
		     /db_xref="GI:444175216"
		     /translation="EQSRKRRRTPKKAKANTSSASNESISNRTRHCQPKKAKKETVEK
		     TVATAPGLGR"
     gene	     77..2719
		     /gene="env"
     CDS	     77..2719
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGD81450.1"
		     /db_xref="GI:444175217"
		     /translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNGDYSEMALNVTESFDAWNNTVTEQAIEDVWQLFETSTRPCV
		     KLSPLCITMKCNKSETDRWGLTKSITATASTTPMAASAEVGMINETSSCIAQDNCTGL
		     EQEQMISCKFNMTGLKRDKRREYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQE
		     SCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFG
		     FNGTRAENRTYIYWHGRDNRTIISLNKYYNLTIKCRRPGNKTVLPVTIMSGLVFHSQP
		     INDRPKQAWCWFGGEWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMW
		     TNCRGEFLYCKMNWFLNWVEDRNTTNQKPQEQHKRNYVPCHIRQIINTWHKVGKNVYL
		     PPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLA
		     PTNVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMSAASLTLSAQSRTLLAGIVQQQQ
		     QLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWP
		     NTSLTPKWNNETWQEWERKVDFLEENITTLLEEAQIQQERNMYELQKLNSWDVFGNWF
		     DLASWIKYIQYGVYIVVGVIMLRIVIYIVQMLAKLAKVRQRPVFSSPPSYFQQIHIQQ
		     DPALPTKEGKEGDGGEDGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQI
		     LQPILQGLSATLQGIREVLRTELTYLQYGWSYFYEAVQAVWRSATETLAGAWGDLWET
		     LRRGGRWILAIPRRIRQGLELTLL"
BASE COUNT	878 a	 516 c	  654 g    671 t
ORIGIN
       1 atgagcaatc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg 
      61 catcaaacga gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt 
     121 aagtgtctac gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcctg 
     181 gaggaatgcg acaattcccc tcttttgtgc aaccaagaat agggatactt ggggaacaac 
     241 tcaatgccta ccagataatg gtgattattc agaaatggcc cttaatgtta cagaaagctt 
     301 tgatgcctgg aataatacag tcacagaaca ggcaatagag gatgtatggc aactctttga 
     361 gacctcaaca aggccttgtg taaaattatc cccattatgc attactatga aatgcaataa 
     421 aagtgagaca gatagatggg gattgacaaa atcaataaca gcaacagcat caacaacacc 
     481 aatggcagca tcagcagaag taggcatgat caatgagact agttcttgta tagcccagga 
     541 taattgcaca ggcttggaac aagagcaaat gataagctgt aaattcaaca tgacagggtt 
     601 aaaaagagac aagagaagag agtacaatga aacttggtac tctgcagatt tggtatgtga 
     661 acaagggaat aacactggta atgaaagtag atgttacatg aaccactgta acacttctgt 
     721 tatccaagag tcttgtgaca aacattattg ggatgctatt agatttaggt attgtgcacc 
     781 tccaggttat gctttgctta gatgtaatga cacaaattat tcaggcttta tgcctaaatg 
     841 ttctaaggtg gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt 
     901 tggctttaat ggaactagag cagaaaatag aacttatatt tactggcatg gtagggataa 
     961 taggactata attagtttaa ataagtatta taatctaaca ataaaatgta gaagaccagg 
    1021 aaataagaca gttttaccag tcaccattat gtctggattg gttttccact cacaaccaat 
    1081 caatgatagg ccaaagcagg catggtgttg gtttggagga gaatggaagg atgcaataaa 
    1141 agaggtgaag cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa 
    1201 aatcaatttg acggctcctg gaggaggaga tccggaagtt accttcatgt ggacaaattg 
    1261 cagaggagag ttcctctact gtaaaatgaa ttggtttcta aattgggtag aagataggaa 
    1321 tacaactaac cagaagccac aggaacagca taaaaggaat tacgtgccat gtcatattag 
    1381 acaaataatc aacacttggc ataaagtagg caaaaatgtt tatttgcctc caagagaggg 
    1441 agacctcacg tgtaactcca cagtgaccag tctcatagca aacatagatt ggattgatgg 
    1501 aaaccaaact aatatcacca tgagtgcaga ggtggcagaa ctgtatcgat tggaattggg 
    1561 agattataaa ttagtagaga tcactccaat tggcttggcc cccacaaatg tgaagaggta 
    1621 cactactggt ggcacctcaa gaaataaaag aggggtcttt gtgctagggt tcttgggttt 
    1681 tctcgcaacg gcaggttctg caatgagcgc ggcgtcgttg acgctgtccg ctcagtcccg 
    1741 aactttattg gctgggatag tgcagcaaca gcaacagctg ttggacgtgg tcaagagaca 
    1801 acaagaattg ttgcgactga ccgtctgggg aacaaagaac ctccagacta gggtcactgc 
    1861 catcgagaag tacttaaagg accaggcgca gctgaatgct tggggatgtg cgtttaggca 
    1921 agtctgccac actactgtac catggccaaa tacaagtcta acaccaaagt ggaacaatga 
    1981 gacttggcaa gagtgggagc gaaaggttga cttcttggag gaaaatataa caaccctcct 
    2041 agaggaggca caaattcaac aagagaggaa catgtatgaa ttacaaaagt tgaatagctg 
    2101 ggatgtgttt ggcaattggt ttgaccttgc ttcttggata aagtatatac aatatggagt 
    2161 ttatatagtt gtaggagtaa taatgttaag aatagtgatc tatatagtac agatgctagc 
    2221 taagttagct aaagtaaggc agaggccagt gttctcttcc ccaccctctt atttccagca 
    2281 gatccatatc caacaggacc cggcactgcc aaccaaagaa ggcaaagaag gagacggtgg 
    2341 agaagacggt ggcaacagct cctggccttg gcagatagaa tatattcatt tcctgatccg 
    2401 ccaactgata cgcctcttga cttggctatt cagcaactgc agaaccttgc tatcgagagt 
    2461 ataccagatc ctccaaccaa tactccaggg gctctctgcg accctacagg ggattcgaga 
    2521 agtcctcagg actgaactaa cctacctaca atatgggtgg agctatttct atgaggcggt 
    2581 ccaggccgtc tggagatctg cgacagagac tcttgcaggc gcgtggggag acttatggga 
    2641 gactcttagg agaggtggaa gatggatact cgcaatcccc aggaggatta gacaagggct 
    2701 tgagctcact ctcttgtga
//
last modified: Tue May 31 10:56 2022


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