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LOCUS JQ744138 2719 bp DNA linear VRL 02-FEB-2013
DEFINITION Simian immunodeficiency virus isolate EC51.wk95.P5G11 from USA rev
protein (rev) gene, complete cds; tat protein (tat) gene, partial
cds; and envelope glycoprotein (env) gene, complete cds
ACCESSION JQ744138
VERSION JQ744138.1 GI:444175214
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2719)
Show all sequences for reference 1
AUTHORS Breed,M.W., Jordan,A.P., Aye,P.P., Lichtveld,C.F., Midkiff,C.C.,
Schiro,F.R., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.G.,
Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
Keele,B.F., Hoxie,J.A. and Lackner,A.A.
TITLE Loss of a tyrosine-dependent trafficking motif in the simian
immunodeficiency virus envelope cytoplasmic tail spares mucosal CD4
cells but does not prevent disease progression
JOURNAL J. Virol. 87 (3), 1528-1543 (2013)
PUBMED 23152518
REFERENCE 2 (bases 1 to 2719)
Show all sequences for reference 2
AUTHORS Breed,M.W., Jordan,A.P.O., Aye,P.P., Lichtveld,C.F., Midkiff,C.,
Schiro,F., Haggarty,B.S., Sugimoto,C., Alvarez,X., Sandler,N.,
Douek,D.C., Kuroda,M.J., Pahar,B., Piatak,M. Jr.., Lifson,J.D.,
Keele,B.F., Hoxie,J.A. and Lackner,A.A.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2012) AIDS and Cancer Virus Program,
SAIC-Frederick, Inc., 1050 Boyles Street, Frederick, MD 21702, USA
FEATURES Location/Qualifiers
source 1..2719
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="EC51.wk95.P5G11"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
gene 1..2535
/gene="rev"
CDS join(1..70,2282..2535)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AGD81448.1"
/db_xref="GI:444175215"
/translation="MSNHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPGALCDPTGDS
RSPQD"
gene <1..2378
/gene="tat"
CDS join(<1..70,2282..2378)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="AGD81449.1"
/db_xref="GI:444175216"
/translation="EQSRKRRRTPKKAKANTSSASNESISNRTRHCQPKKAKKETVEK
TVATAPGLGR"
gene 77..2719
/gene="env"
CDS 77..2719
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGD81450.1"
/db_xref="GI:444175217"
/translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
ATKNRDTWGTTQCLPDNGDYSEMALNVTESFDAWNNTVTEQAIEDVWQLFETSTRPCV
KLSPLCITMKCNKSETDRWGLTKSITATASTTPMAASAEVGMINETSSCIAQDNCTGL
EQEQMISCKFNMTGLKRDKRREYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQE
SCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFG
FNGTRAENRTYIYWHGRDNRTIISLNKYYNLTIKCRRPGNKTVLPVTIMSGLVFHSQP
INDRPKQAWCWFGGEWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMW
TNCRGEFLYCKMNWFLNWVEDRNTTNQKPQEQHKRNYVPCHIRQIINTWHKVGKNVYL
PPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLA
PTNVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMSAASLTLSAQSRTLLAGIVQQQQ
QLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWP
NTSLTPKWNNETWQEWERKVDFLEENITTLLEEAQIQQERNMYELQKLNSWDVFGNWF
DLASWIKYIQYGVYIVVGVIMLRIVIYIVQMLAKLAKVRQRPVFSSPPSYFQQIHIQQ
DPALPTKEGKEGDGGEDGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQI
LQPILQGLSATLQGIREVLRTELTYLQYGWSYFYEAVQAVWRSATETLAGAWGDLWET
LRRGGRWILAIPRRIRQGLELTLL"
BASE COUNT 878 a 516 c 654 g 671 t
ORIGIN
1 atgagcaatc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg
61 catcaaacga gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt
121 aagtgtctac gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcctg
181 gaggaatgcg acaattcccc tcttttgtgc aaccaagaat agggatactt ggggaacaac
241 tcaatgccta ccagataatg gtgattattc agaaatggcc cttaatgtta cagaaagctt
301 tgatgcctgg aataatacag tcacagaaca ggcaatagag gatgtatggc aactctttga
361 gacctcaaca aggccttgtg taaaattatc cccattatgc attactatga aatgcaataa
421 aagtgagaca gatagatggg gattgacaaa atcaataaca gcaacagcat caacaacacc
481 aatggcagca tcagcagaag taggcatgat caatgagact agttcttgta tagcccagga
541 taattgcaca ggcttggaac aagagcaaat gataagctgt aaattcaaca tgacagggtt
601 aaaaagagac aagagaagag agtacaatga aacttggtac tctgcagatt tggtatgtga
661 acaagggaat aacactggta atgaaagtag atgttacatg aaccactgta acacttctgt
721 tatccaagag tcttgtgaca aacattattg ggatgctatt agatttaggt attgtgcacc
781 tccaggttat gctttgctta gatgtaatga cacaaattat tcaggcttta tgcctaaatg
841 ttctaaggtg gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt
901 tggctttaat ggaactagag cagaaaatag aacttatatt tactggcatg gtagggataa
961 taggactata attagtttaa ataagtatta taatctaaca ataaaatgta gaagaccagg
1021 aaataagaca gttttaccag tcaccattat gtctggattg gttttccact cacaaccaat
1081 caatgatagg ccaaagcagg catggtgttg gtttggagga gaatggaagg atgcaataaa
1141 agaggtgaag cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa
1201 aatcaatttg acggctcctg gaggaggaga tccggaagtt accttcatgt ggacaaattg
1261 cagaggagag ttcctctact gtaaaatgaa ttggtttcta aattgggtag aagataggaa
1321 tacaactaac cagaagccac aggaacagca taaaaggaat tacgtgccat gtcatattag
1381 acaaataatc aacacttggc ataaagtagg caaaaatgtt tatttgcctc caagagaggg
1441 agacctcacg tgtaactcca cagtgaccag tctcatagca aacatagatt ggattgatgg
1501 aaaccaaact aatatcacca tgagtgcaga ggtggcagaa ctgtatcgat tggaattggg
1561 agattataaa ttagtagaga tcactccaat tggcttggcc cccacaaatg tgaagaggta
1621 cactactggt ggcacctcaa gaaataaaag aggggtcttt gtgctagggt tcttgggttt
1681 tctcgcaacg gcaggttctg caatgagcgc ggcgtcgttg acgctgtccg ctcagtcccg
1741 aactttattg gctgggatag tgcagcaaca gcaacagctg ttggacgtgg tcaagagaca
1801 acaagaattg ttgcgactga ccgtctgggg aacaaagaac ctccagacta gggtcactgc
1861 catcgagaag tacttaaagg accaggcgca gctgaatgct tggggatgtg cgtttaggca
1921 agtctgccac actactgtac catggccaaa tacaagtcta acaccaaagt ggaacaatga
1981 gacttggcaa gagtgggagc gaaaggttga cttcttggag gaaaatataa caaccctcct
2041 agaggaggca caaattcaac aagagaggaa catgtatgaa ttacaaaagt tgaatagctg
2101 ggatgtgttt ggcaattggt ttgaccttgc ttcttggata aagtatatac aatatggagt
2161 ttatatagtt gtaggagtaa taatgttaag aatagtgatc tatatagtac agatgctagc
2221 taagttagct aaagtaaggc agaggccagt gttctcttcc ccaccctctt atttccagca
2281 gatccatatc caacaggacc cggcactgcc aaccaaagaa ggcaaagaag gagacggtgg
2341 agaagacggt ggcaacagct cctggccttg gcagatagaa tatattcatt tcctgatccg
2401 ccaactgata cgcctcttga cttggctatt cagcaactgc agaaccttgc tatcgagagt
2461 ataccagatc ctccaaccaa tactccaggg gctctctgcg accctacagg ggattcgaga
2521 agtcctcagg actgaactaa cctacctaca atatgggtgg agctatttct atgaggcggt
2581 ccaggccgtc tggagatctg cgacagagac tcttgcaggc gcgtggggag acttatggga
2641 gactcttagg agaggtggaa gatggatact cgcaatcccc aggaggatta gacaagggct
2701 tgagctcact ctcttgtga
//
last modified: Tue May 31 10:56 2022