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LOCUS JQ716908 867 bp RNA linear VRL 22-MAY-2012
DEFINITION HIV-1 isolate BAA295925 from Spain integrase (pol) gene, partial
cds
ACCESSION JQ716908
VERSION JQ716908.1 GI:387863510
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 867)
Show all sequences for reference 1
AUTHORS Garrido,C., Villacian,J., Zahonero,N., Pattery,T., Garcia,F.,
Gutierrez,F., Caballero,E., Van Houtte,M., Soriano,V. and de
Mendoza,C.
CONSRTM on behalf of the SINRES Group
TITLE Broad Phenotypic Cross-Resistance to Elvitegravir in HIV-Infected
Patients Failing on Raltegravir-Containing Regimens
JOURNAL Antimicrob. Agents Chemother. 56 (6), 2873-2878 (2012)
PUBMED 22450969
REFERENCE 2 (bases 1 to 867)
Show all sequences for reference 2
AUTHORS Garrido,C., Villacian,J., Zahonero,N., Pattery,T., Garcia,F.,
Gutierrez,F., Caballero,E., Van Houtte,M., Soriano,V. and de
Mendoza,C.
CONSRTM on behalf of the SINRES Group
TITLE Direct Submission
JOURNAL Submitted (27-FEB-2012) Infectious Diseases, Hospital Carlos III,
c/ Sinesio Delgado 10, Madrid, Madrid 28029, Spain
COMMENT ##Assembly-Data-START## Assembly Method SeqScape v. v2.5 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..867
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BAA295925"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Spain"
/collection_date="2009"
gene <1..867
/gene="pol"
CDS <1..867
/gene="pol"
/note="pol protein"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="AFK09318.1"
/db_xref="GI:387863511"
/translation="FLDGIDQAQEDHXKYHSNWXAMASDFNLPPVVAKEIVASCDKCQ
LKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFIL
KLAGRWPVKTIHTDNGPNFISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYTAGERIVDMIATDIQTKELQKQIT
KIQNFRVYFRDSRDPLWKGPAKLLWKGEGAVVIQDNNEIKVVPRRKAKIIRDYGKQMA
GDDCVASRQDED"
BASE COUNT 337 a 130 c 206 g 187 t 7 other
ORIGIN
1 tttttagatg gaatagacca agcccaggaa gaccatgava aatatcacag taattggara
61 gcaatggcta gtgattttaa cctgccacct gtagtagcaa aagaaatagt agccagctgt
121 gataaatgtc agytaaaagg agaagccatg catggacaag tagactgtag tccaggaata
181 tggcaactag attgtacaca tttagaaggr aaaattatcc tggtagcagt tcatgtagcc
241 agtggctata tagaagcaga agttattcca gcagaaacag grcaggaaac agcatatttt
301 atcttaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggccccaat
361 ttcatyagtg ctacagttaa ggcygcctgt tggtgggcag ggatcaagca ggaatttggc
421 attccctaca atccccaaag tcaaggggta gtagaatcca tgaataaaga attaaagaaa
481 attataggac aggtaagaga tcaggctgaa catcttaaga cagcagtaca aatggcagta
541 ttcattcaca attttaaaag aaaagggggg attggagggt acactgcagg ggaaagaata
601 gtagacatga tagcaacaga catacaaact aaagaactac aaaaacaaat tacaaaaatt
661 caaaattttc gggtttattt cagggacagc agagatccac tttggaaagg accagcaaaa
721 cttctctgga aaggtgaagg ggcagtagta atacaagata ataatgaaat aaaagtagtg
781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt
841 gtggcaagta gacaggatga ggattag
//
last modified: Tue May 31 10:56 2022