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LOCUS	    JQ716908		     867 bp    RNA     linear	VRL 22-MAY-2012
DEFINITION  HIV-1 isolate BAA295925 from Spain integrase (pol) gene, partial
	    cds
ACCESSION   JQ716908
VERSION     JQ716908.1 GI:387863510
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 867)
            Show all sequences for reference 1
  AUTHORS   Garrido,C., Villacian,J., Zahonero,N., Pattery,T., Garcia,F.,
	    Gutierrez,F., Caballero,E., Van Houtte,M., Soriano,V. and de
	    Mendoza,C.
  CONSRTM   on behalf of the SINRES Group
  TITLE     Broad Phenotypic Cross-Resistance to Elvitegravir in HIV-Infected
	    Patients Failing on Raltegravir-Containing Regimens
  JOURNAL   Antimicrob. Agents Chemother. 56 (6), 2873-2878 (2012)
  PUBMED    22450969
REFERENCE   2 (bases 1 to 867)
            Show all sequences for reference 2
  AUTHORS   Garrido,C., Villacian,J., Zahonero,N., Pattery,T., Garcia,F.,
	    Gutierrez,F., Caballero,E., Van Houtte,M., Soriano,V. and de
	    Mendoza,C.
  CONSRTM   on behalf of the SINRES Group
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2012) Infectious Diseases, Hospital Carlos III,
	    c/ Sinesio Delgado 10, Madrid, Madrid 28029, Spain
COMMENT     ##Assembly-Data-START## Assembly Method SeqScape v. v2.5 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..867
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BAA295925"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Spain"
		     /collection_date="2009"
     gene	     <1..867
		     /gene="pol"
     CDS	     <1..867
		     /gene="pol"
		     /note="pol protein"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="AFK09318.1"
		     /db_xref="GI:387863511"
		     /translation="FLDGIDQAQEDHXKYHSNWXAMASDFNLPPVVAKEIVASCDKCQ
		     LKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFIL
		     KLAGRWPVKTIHTDNGPNFISATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
		     IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYTAGERIVDMIATDIQTKELQKQIT
		     KIQNFRVYFRDSRDPLWKGPAKLLWKGEGAVVIQDNNEIKVVPRRKAKIIRDYGKQMA
		     GDDCVASRQDED"
BASE COUNT	337 a	 130 c	  206 g    187 t      7 other
ORIGIN
       1 tttttagatg gaatagacca agcccaggaa gaccatgava aatatcacag taattggara 
      61 gcaatggcta gtgattttaa cctgccacct gtagtagcaa aagaaatagt agccagctgt 
     121 gataaatgtc agytaaaagg agaagccatg catggacaag tagactgtag tccaggaata 
     181 tggcaactag attgtacaca tttagaaggr aaaattatcc tggtagcagt tcatgtagcc 
     241 agtggctata tagaagcaga agttattcca gcagaaacag grcaggaaac agcatatttt 
     301 atcttaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggccccaat 
     361 ttcatyagtg ctacagttaa ggcygcctgt tggtgggcag ggatcaagca ggaatttggc 
     421 attccctaca atccccaaag tcaaggggta gtagaatcca tgaataaaga attaaagaaa 
     481 attataggac aggtaagaga tcaggctgaa catcttaaga cagcagtaca aatggcagta 
     541 ttcattcaca attttaaaag aaaagggggg attggagggt acactgcagg ggaaagaata 
     601 gtagacatga tagcaacaga catacaaact aaagaactac aaaaacaaat tacaaaaatt 
     661 caaaattttc gggtttattt cagggacagc agagatccac tttggaaagg accagcaaaa 
     721 cttctctgga aaggtgaagg ggcagtagta atacaagata ataatgaaat aaaagtagtg 
     781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt 
     841 gtggcaagta gacaggatga ggattag
//
last modified: Tue May 31 10:56 2022


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