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LOCUS	    JQ716891		     867 bp    RNA     linear	VRL 22-MAY-2012
DEFINITION  HIV-1 isolate BAA295890 from Spain integrase (pol) gene, partial
	    cds
ACCESSION   JQ716891
VERSION     JQ716891.1 GI:387863476
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 867)
            Show all sequences for reference 1
  AUTHORS   Garrido,C., Villacian,J., Zahonero,N., Pattery,T., Garcia,F.,
	    Gutierrez,F., Caballero,E., Van Houtte,M., Soriano,V. and de
	    Mendoza,C.
  CONSRTM   on behalf of the SINRES Group
  TITLE     Broad Phenotypic Cross-Resistance to Elvitegravir in HIV-Infected
	    Patients Failing on Raltegravir-Containing Regimens
  JOURNAL   Antimicrob. Agents Chemother. 56 (6), 2873-2878 (2012)
  PUBMED    22450969
REFERENCE   2 (bases 1 to 867)
            Show all sequences for reference 2
  AUTHORS   Garrido,C., Villacian,J., Zahonero,N., Pattery,T., Garcia,F.,
	    Gutierrez,F., Caballero,E., Van Houtte,M., Soriano,V. and de
	    Mendoza,C.
  CONSRTM   on behalf of the SINRES Group
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2012) Infectious Diseases, Hospital Carlos III,
	    c/ Sinesio Delgado 10, Madrid, Madrid 28029, Spain
COMMENT     ##Assembly-Data-START## Assembly Method SeqScape v. v2.5 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..867
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BAA295890"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Spain"
		     /collection_date="2009"
     gene	     <1..867
		     /gene="pol"
     CDS	     <1..867
		     /gene="pol"
		     /note="pol protein"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="AFK09301.1"
		     /db_xref="GI:387863477"
		     /translation="FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQ
		     LKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLL
		     KLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKK
		     IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIXDIIATDIQTKELQKQIT
		     KIQNFRVYYRDSRDPHWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
		     GDDCVASRQDED"
BASE COUNT	340 a	 129 c	  209 g    183 t      6 other
ORIGIN
       1 tttttagatg gaatagataa ggcccaagaa gaacatgaaa aatatcacag taattggaga 
      61 gcaatggcta gtgattttaa cctgccacct gtagtagcaa aagaratagt agccagctgt 
     121 gataaatgtc agctaaaagg agaagccatg catggacaag tagactgtag tccaggaata 
     181 tggcaactag attgtacaca tttagaagga aaaattatcc tggtagcagt tcatgtagcc 
     241 agtggatata tagaagcaga agttatycca gcagaaacag ggcaggaaac agcatacttt 
     301 ctcttaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggcagcaat 
     361 ttcaccagta ctacagttaa agctgcctgt tggtgggcag ggatcaagca ggaatttggy 
     421 attccctaca atccccaaag ccaaggggta gtggaatcta tgaataatga attaaagaaa 
     481 attataggac argtaagaga tcaggctgaa catcttaaga cagcagtaca aatggcagta 
     541 ttcatccaca attttaaaag aaaagggggg attggggggt acagtgcagg agaaagaata 
     601 rtagacataa tagcaacaga catacaaact aaagaactac aaaaacaaat tacaaaaatt 
     661 caaaattttc gggtttatta cagggacagc agagayccac attggaaagg accagcaaag 
     721 cttctctgga aaggtgaagg ggcagtagta atacaggata atagtgacat aaaagtagtg 
     781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt 
     841 gtggcaagta gacaggatga ggattag
//
last modified: Tue May 31 10:56 2022


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