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LOCUS JQ716891 867 bp RNA linear VRL 22-MAY-2012
DEFINITION HIV-1 isolate BAA295890 from Spain integrase (pol) gene, partial
cds
ACCESSION JQ716891
VERSION JQ716891.1 GI:387863476
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 867)
Show all sequences for reference 1
AUTHORS Garrido,C., Villacian,J., Zahonero,N., Pattery,T., Garcia,F.,
Gutierrez,F., Caballero,E., Van Houtte,M., Soriano,V. and de
Mendoza,C.
CONSRTM on behalf of the SINRES Group
TITLE Broad Phenotypic Cross-Resistance to Elvitegravir in HIV-Infected
Patients Failing on Raltegravir-Containing Regimens
JOURNAL Antimicrob. Agents Chemother. 56 (6), 2873-2878 (2012)
PUBMED 22450969
REFERENCE 2 (bases 1 to 867)
Show all sequences for reference 2
AUTHORS Garrido,C., Villacian,J., Zahonero,N., Pattery,T., Garcia,F.,
Gutierrez,F., Caballero,E., Van Houtte,M., Soriano,V. and de
Mendoza,C.
CONSRTM on behalf of the SINRES Group
TITLE Direct Submission
JOURNAL Submitted (27-FEB-2012) Infectious Diseases, Hospital Carlos III,
c/ Sinesio Delgado 10, Madrid, Madrid 28029, Spain
COMMENT ##Assembly-Data-START## Assembly Method SeqScape v. v2.5 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..867
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BAA295890"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Spain"
/collection_date="2009"
gene <1..867
/gene="pol"
CDS <1..867
/gene="pol"
/note="pol protein"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="AFK09301.1"
/db_xref="GI:387863477"
/translation="FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQ
LKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLL
KLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKK
IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIXDIIATDIQTKELQKQIT
KIQNFRVYYRDSRDPHWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
GDDCVASRQDED"
BASE COUNT 340 a 129 c 209 g 183 t 6 other
ORIGIN
1 tttttagatg gaatagataa ggcccaagaa gaacatgaaa aatatcacag taattggaga
61 gcaatggcta gtgattttaa cctgccacct gtagtagcaa aagaratagt agccagctgt
121 gataaatgtc agctaaaagg agaagccatg catggacaag tagactgtag tccaggaata
181 tggcaactag attgtacaca tttagaagga aaaattatcc tggtagcagt tcatgtagcc
241 agtggatata tagaagcaga agttatycca gcagaaacag ggcaggaaac agcatacttt
301 ctcttaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggcagcaat
361 ttcaccagta ctacagttaa agctgcctgt tggtgggcag ggatcaagca ggaatttggy
421 attccctaca atccccaaag ccaaggggta gtggaatcta tgaataatga attaaagaaa
481 attataggac argtaagaga tcaggctgaa catcttaaga cagcagtaca aatggcagta
541 ttcatccaca attttaaaag aaaagggggg attggggggt acagtgcagg agaaagaata
601 rtagacataa tagcaacaga catacaaact aaagaactac aaaaacaaat tacaaaaatt
661 caaaattttc gggtttatta cagggacagc agagayccac attggaaagg accagcaaag
721 cttctctgga aaggtgaagg ggcagtagta atacaggata atagtgacat aaaagtagtg
781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt
841 gtggcaagta gacaggatga ggattag
//
last modified: Tue May 31 10:56 2022