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LOCUS JQ625653 1302 bp RNA linear VRL 09-MAR-2013
DEFINITION HIV-1 isolate KMN10_570005922202 from Kenya pol protein (pol) gene,
partial cds
ACCESSION JQ625653
VERSION JQ625653.1 GI:459164014
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Antiretroviral prophylaxis for HIV prevention in heterosexual men
and women
JOURNAL N. Engl. J. Med. 367 (5), 399-410 (2012)
PUBMED 22784037
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2012) Center for Childhood Infections and
Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
Seattle, WA 98105, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="KMN10_570005922202"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Kenya"
/collection_date="2009"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGG40527.1"
/db_xref="GI:459164015"
/translation="PQITLWQRPIVTVRIGGQLKEALLDTGADDTVLEDIDLPGKWKP
RMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LHEEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPE
IIIYQYMDDLYVGSDLEIGQHRTKIEELRTHLLSWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIELPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
TLTEEAELELAENREILKNPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT 514 a 211 c 282 g 295 t
ORIGIN
1 cctcaaatca ctctttggca acgacccatt gtcacagtaa gaataggggg acaactaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagacataga tttgccagga
121 aaatggaaac caagaatgat agggggaatt ggaggcttca tcaaggtaaa acagtatgat
181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaata taattggaag aaacatgttg acccagattg gttgtacttt aaatttccca
301 attagtccta ttgagactgt accagtaaaa ttaaaaccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagaaatttg tacagacatg
421 gaaaaggaag gaaagatttc aagaattggg cctgaaaacc catacaatac tccaatattt
481 gcaataaaga aaaaggatag cactaaatgg agaaaattag tagatttcag ggagctcaat
541 aaaagaacac aagacttttg ggaagttcaa ttgggaatac cgcacccagc gggcctaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt tcctttacat
661 gaagaattta gaaaatatac tgcgttcacc atacctagta caaacaatga gacaccagga
721 atcagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agatcaaaaa atccagaaat aattatctat
841 caatacatgg atgatttgta tgtaggatct gatttggaaa tagggcagca tagaacaaaa
901 atagaggagt taagaactca tctattgagc tggggattta ctacaccaga caaaaagcat
961 cagaaagaac ctccattctt gtggatggga tatgagctcc atcctgacaa gtggacagtc
1021 cagcctatag agctgccaga aaaggaaagc tggactgtca atgatataca gaaattggtg
1081 ggaaaactaa attgggcaag tcaaatttat gcaggaatta aagtaaaaca attgtgtaaa
1141 ctcctcaggg gagccaaagc actaacagat atagtaacat tgactgagga ggcagaatta
1201 gagttggcag agaacaggga gattctaaaa aaccctgtac atggagtgta ttatgaccca
1261 tcaaaagatt taatagcaga aatacagaaa caagggcagg ac
//
last modified: Tue May 31 10:56 2022