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LOCUS	    JQ625653		    1302 bp    RNA     linear	VRL 09-MAR-2013
DEFINITION  HIV-1 isolate KMN10_570005922202 from Kenya pol protein (pol) gene,
	    partial cds
ACCESSION   JQ625653
VERSION     JQ625653.1 GI:459164014
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Antiretroviral prophylaxis for HIV prevention in heterosexual men
	    and women
  JOURNAL   N. Engl. J. Med. 367 (5), 399-410 (2012)
  PUBMED    22784037
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2012) Center for Childhood Infections and
	    Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
	    Seattle, WA 98105, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="KMN10_570005922202"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Kenya"
		     /collection_date="2009"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGG40527.1"
		     /db_xref="GI:459164015"
		     /translation="PQITLWQRPIVTVRIGGQLKEALLDTGADDTVLEDIDLPGKWKP
		     RMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LHEEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPE
		     IIIYQYMDDLYVGSDLEIGQHRTKIEELRTHLLSWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIELPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
		     TLTEEAELELAENREILKNPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT	514 a	 211 c	  282 g    295 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccatt gtcacagtaa gaataggggg acaactaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacataga tttgccagga 
     121 aaatggaaac caagaatgat agggggaatt ggaggcttca tcaaggtaaa acagtatgat 
     181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaata taattggaag aaacatgttg acccagattg gttgtacttt aaatttccca 
     301 attagtccta ttgagactgt accagtaaaa ttaaaaccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagaaatttg tacagacatg 
     421 gaaaaggaag gaaagatttc aagaattggg cctgaaaacc catacaatac tccaatattt 
     481 gcaataaaga aaaaggatag cactaaatgg agaaaattag tagatttcag ggagctcaat 
     541 aaaagaacac aagacttttg ggaagttcaa ttgggaatac cgcacccagc gggcctaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt tcctttacat 
     661 gaagaattta gaaaatatac tgcgttcacc atacctagta caaacaatga gacaccagga 
     721 atcagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatctt agagcccttt agatcaaaaa atccagaaat aattatctat 
     841 caatacatgg atgatttgta tgtaggatct gatttggaaa tagggcagca tagaacaaaa 
     901 atagaggagt taagaactca tctattgagc tggggattta ctacaccaga caaaaagcat 
     961 cagaaagaac ctccattctt gtggatggga tatgagctcc atcctgacaa gtggacagtc 
    1021 cagcctatag agctgccaga aaaggaaagc tggactgtca atgatataca gaaattggtg 
    1081 ggaaaactaa attgggcaag tcaaatttat gcaggaatta aagtaaaaca attgtgtaaa 
    1141 ctcctcaggg gagccaaagc actaacagat atagtaacat tgactgagga ggcagaatta 
    1201 gagttggcag agaacaggga gattctaaaa aaccctgtac atggagtgta ttatgaccca 
    1261 tcaaaagatt taatagcaga aatacagaaa caagggcagg ac
//
last modified: Tue May 31 10:56 2022


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