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LOCUS JQ625630 1302 bp RNA linear VRL 09-MAR-2013
DEFINITION HIV-1 isolate KOD55_570039272203 from Kenya pol protein (pol) gene,
partial cds
ACCESSION JQ625630
VERSION JQ625630.1 GI:459163968
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Antiretroviral prophylaxis for HIV prevention in heterosexual men
and women
JOURNAL N. Engl. J. Med. 367 (5), 399-410 (2012)
PUBMED 22784037
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2012) Center for Childhood Infections and
Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
Seattle, WA 98105, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="KOD55_570039272203"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Kenya"
/collection_date="2010"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGG40504.1"
/db_xref="GI:459163969"
/translation="PQITLWQRPLVTVKIGGQLREALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTAEKIKALTDICTEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDENFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGLTTPDKKHQKEPPFLWMGYELH
PDKWTIQPIELPDKESWTVNDLQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTDII
PLTEEAELELAENREILKEPVFGVYYDPSKDLIAEIQKQGND"
BASE COUNT 516 a 217 c 274 g 295 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggagg gcagttaaga
61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat
181 cagatactta tagagatttg tggaaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaacatgttg acccagattg gttgtacttt aaatttccca
301 attagtccta ttgagactgt accagtaaaa ttaaagccag gaatggatgg gccaaaggtt
361 aaacagtggc cattgacagc agaaaaaata aaagcattaa cagacatttg tacagagatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt
481 gctataaaga aaaaagacag cactaaatgg agaaaactag tagactttag agagctcaat
541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cgcatccagc gggcctaaag
601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt tcctttagat
661 gaaaacttta gaaaatatac tgcattcacc atacctagta caaacaatga gacaccagga
721 atcagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agatcaaaaa atccagaaat agttatttat
841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagggcaaca cagagcaaaa
901 atagaggaat taagagaaca tctattaaag tggggactta ccacaccaga taagaagcat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacaata
1021 cagcctatag agctgccaga caaggagagc tggactgtca atgatctaca gaagttagtg
1081 ggaaaattaa actgggcaag ccagatttac ccagggatta aagtaaagca actttgtaaa
1141 ctccttaggg ggaccaaagc actaacagac atcataccac taactgaaga agcagagtta
1201 gaattggcag agaacaggga aattctaaaa gaaccagtat ttggggtata ttatgaccca
1261 tcaaaagact tgatagctga aatacagaaa cagggaaatg ac
//
last modified: Tue May 31 10:56 2022