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LOCUS	    JQ625630		    1302 bp    RNA     linear	VRL 09-MAR-2013
DEFINITION  HIV-1 isolate KOD55_570039272203 from Kenya pol protein (pol) gene,
	    partial cds
ACCESSION   JQ625630
VERSION     JQ625630.1 GI:459163968
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Antiretroviral prophylaxis for HIV prevention in heterosexual men
	    and women
  JOURNAL   N. Engl. J. Med. 367 (5), 399-410 (2012)
  PUBMED    22784037
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2012) Center for Childhood Infections and
	    Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
	    Seattle, WA 98105, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="KOD55_570039272203"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Kenya"
		     /collection_date="2010"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGG40504.1"
		     /db_xref="GI:459163969"
		     /translation="PQITLWQRPLVTVKIGGQLREALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTAEKIKALTDICTEMEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDENFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTIQPIELPDKESWTVNDLQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTDII
		     PLTEEAELELAENREILKEPVFGVYYDPSKDLIAEIQKQGND"
BASE COUNT	516 a	 217 c	  274 g    295 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggagg gcagttaaga 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 cagatactta tagagatttg tggaaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaacatgttg acccagattg gttgtacttt aaatttccca 
     301 attagtccta ttgagactgt accagtaaaa ttaaagccag gaatggatgg gccaaaggtt 
     361 aaacagtggc cattgacagc agaaaaaata aaagcattaa cagacatttg tacagagatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt 
     481 gctataaaga aaaaagacag cactaaatgg agaaaactag tagactttag agagctcaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cgcatccagc gggcctaaag 
     601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt tcctttagat 
     661 gaaaacttta gaaaatatac tgcattcacc atacctagta caaacaatga gacaccagga 
     721 atcagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatctt agagcccttt agatcaaaaa atccagaaat agttatttat 
     841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagggcaaca cagagcaaaa 
     901 atagaggaat taagagaaca tctattaaag tggggactta ccacaccaga taagaagcat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacaata 
    1021 cagcctatag agctgccaga caaggagagc tggactgtca atgatctaca gaagttagtg 
    1081 ggaaaattaa actgggcaag ccagatttac ccagggatta aagtaaagca actttgtaaa 
    1141 ctccttaggg ggaccaaagc actaacagac atcataccac taactgaaga agcagagtta 
    1201 gaattggcag agaacaggga aattctaaaa gaaccagtat ttggggtata ttatgaccca 
    1261 tcaaaagact tgatagctga aatacagaaa cagggaaatg ac
//
last modified: Tue May 31 10:56 2022


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