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LOCUS	    JQ625628		    1302 bp    RNA     linear	VRL 09-MAR-2013
DEFINITION  HIV-1 isolate LCF81_500014922202 from Uganda pol protein (pol)
	    gene, partial cds
ACCESSION   JQ625628
VERSION     JQ625628.1 GI:459163964
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Antiretroviral prophylaxis for HIV prevention in heterosexual men
	    and women
  JOURNAL   N. Engl. J. Med. 367 (5), 399-410 (2012)
  PUBMED    22784037
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2012) Center for Childhood Infections and
	    Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
	    Seattle, WA 98105, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="LCF81_500014922202"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /collection_date="2009"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGG40502.1"
		     /db_xref="GI:459163965"
		     /translation="PQITLWQRPIVTVKVGGQLKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQIVIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVQLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISXIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKNFRKYTAFTIPSTNNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSRNPE
		     IIIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCRLIRGTKALTEVV
		     TLTEEAELELAENREILKDPVHGVYYDPSKELIAEIQKQGQD"
BASE COUNT	520 a	 212 c	  273 g    295 t      2 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccatt gttacagtaa aagtaggagg acagctaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtgag acagtatgat 
     181 cagatagtta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgtta acccaaattg gttgtacttt aaattttcca 
     301 ataagtccta ttgagactgt accagtacaa ttaaaaccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagagatg 
     421 gaaaaggaag ggaaaatctc aaraattggg cctgaaaatc catacaatac tccaatattt 
     481 gctataaaga aaaaagacag cactaaatgg aggaaactag tagatttcag agaactcaat 
     541 aaaagaactc aggatttctg ggaagttcaa ttaggaatac ctcatccagc aggtttaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt ccctttagat 
     661 aaaaacttta gaaagtacac tgcattcacc atacctagta caaacaatga gacaccagga 
     721 gtcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattycag 
     781 agtagcatga caaaaatctt agagcccttc aggtcacgaa atccagaaat aattatctat 
     841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagggcaaca tagagcaaaa 
     901 atagaggagt taagagctca tctattgagc tgggggttta ctacaccaga caaaaagcat 
     961 cagaaagaac ctccatttct ttggatggga tatgaactac atcctgacaa atggacagtc 
    1021 cagcctatac agctgccaga caaagacagt tggactgtca atgatataca gaaattagtg 
    1081 ggaaaactaa attgggcaag ccagatctat ccaggaatta aagtaaggca actgtgtaga 
    1141 ctcattaggg gaaccaaagc actaacagag gtagtaacac tgactgagga agcagaatta 
    1201 gaactggcag aaaacaggga gattttaaaa gaccctgtgc atggagtata ttatgaccca 
    1261 tcaaaagaat taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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