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LOCUS JQ625628 1302 bp RNA linear VRL 09-MAR-2013
DEFINITION HIV-1 isolate LCF81_500014922202 from Uganda pol protein (pol)
gene, partial cds
ACCESSION JQ625628
VERSION JQ625628.1 GI:459163964
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Antiretroviral prophylaxis for HIV prevention in heterosexual men
and women
JOURNAL N. Engl. J. Med. 367 (5), 399-410 (2012)
PUBMED 22784037
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2012) Center for Childhood Infections and
Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
Seattle, WA 98105, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="LCF81_500014922202"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Uganda"
/collection_date="2009"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGG40502.1"
/db_xref="GI:459163965"
/translation="PQITLWQRPIVTVKVGGQLKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQIVIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVQLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISXIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKNFRKYTAFTIPSTNNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSRNPE
IIIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCRLIRGTKALTEVV
TLTEEAELELAENREILKDPVHGVYYDPSKELIAEIQKQGQD"
BASE COUNT 520 a 212 c 273 g 295 t 2 other
ORIGIN
1 cctcaaatca ctctttggca acgacccatt gttacagtaa aagtaggagg acagctaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtgag acagtatgat
181 cagatagtta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatatgtta acccaaattg gttgtacttt aaattttcca
301 ataagtccta ttgagactgt accagtacaa ttaaaaccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagagatg
421 gaaaaggaag ggaaaatctc aaraattggg cctgaaaatc catacaatac tccaatattt
481 gctataaaga aaaaagacag cactaaatgg aggaaactag tagatttcag agaactcaat
541 aaaagaactc aggatttctg ggaagttcaa ttaggaatac ctcatccagc aggtttaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt ccctttagat
661 aaaaacttta gaaagtacac tgcattcacc atacctagta caaacaatga gacaccagga
721 gtcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattycag
781 agtagcatga caaaaatctt agagcccttc aggtcacgaa atccagaaat aattatctat
841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagggcaaca tagagcaaaa
901 atagaggagt taagagctca tctattgagc tgggggttta ctacaccaga caaaaagcat
961 cagaaagaac ctccatttct ttggatggga tatgaactac atcctgacaa atggacagtc
1021 cagcctatac agctgccaga caaagacagt tggactgtca atgatataca gaaattagtg
1081 ggaaaactaa attgggcaag ccagatctat ccaggaatta aagtaaggca actgtgtaga
1141 ctcattaggg gaaccaaagc actaacagag gtagtaacac tgactgagga agcagaatta
1201 gaactggcag aaaacaggga gattttaaaa gaccctgtgc atggagtata ttatgaccca
1261 tcaaaagaat taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022