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LOCUS JQ609704 2553 bp DNA linear VRL 25-MAR-2012
DEFINITION HIV-1 isolate 45_01dH5 from USA envelope glycoprotein (env) gene,
complete cds
ACCESSION JQ609704
VERSION JQ609704.1 GI:380718144
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2553)
Show all sequences for reference 1
AUTHORS Wu,X., Wang,C., O'Dell,S., Li,Y., Keele,B.F., Yang,Z., Imamichi,H.,
Doria-Rose,N., Hoxie,J.A., Connors,M., Shaw,G.M., Wyatt,R.T. and
Mascola,J.R.
TITLE Selection Pressure on HIV-1 Envelope by Broadly Neutralizing
Antibodies to the Conserved CD4-Binding Site.
JOURNAL J. Virol.. 86(10); 5844-56 (2012)
PUBMED 22419808
REFERENCE 2 (bases 1 to 2553)
Show all sequences for reference 2
AUTHORS Wu,X., Wang,C., O'Dell,S., Li,Y., Keele,B., Yang,Z., Imamichi,H.,
Doria-Rose,N., Hoxie,J., Connors,M., Shaw,G., Wyatt,R. and
Mascola,J.
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2012) VRC / NIAID, NIH, 40 Convent Drive,
Bethesda, MD 20910, USA
FEATURES Location/Qualifiers
source 1..2553
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="45_01dH5"
/isolation_source="PBMC"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="30-Jul-2001"
/note="subtype: B"
gene 1..2553
/gene="env"
CDS 1..2553
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFE02270.1"
/db_xref="GI:380718145"
/translation="MRVTGIKKNCQHLWRGGTLFLGILMICSAAENLWVTVYYGVPVW
KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTEKFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTTSSSGGAMEGGEIKNCSFNIT
TSMRDKVQKEYALFYKLDVVPIDNDNTSTSYRLISCNTSVITQACPKVSFEPIPIHYC
APAGFAILKCNDKKFKGTGSCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSDN
FKDNAKIIIVQLNETVEINCTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNISK
AKWDNTLKQIARKLKEQFENKTIAFNQSSGGDPEIVMHSFNCGGEFFYCNSTQLFNST
WNGTERLNNTGENITITLPCRIRQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTR
DGGNSTNGTETFRPGGGDMRDNWRSELYKYKVVKIEPLGLAPTKAKRRVVQREKRAVG
IGAVFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWG
IKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEKIWNNMTWME
WEREIHNYTSLIYNLIEESQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMI
VGGLVGLRIIFTVFSIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIGEEGGEQDRDRSD
RLVTGFLALFWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEILKYWWNLLQYWS
QELKNSAVSLLNATAIAVAEGTDRVIEVLQRAFRAVLNIPTRIRQGLERALL"
BASE COUNT 889 a 436 c 612 g 616 t
ORIGIN
1 atgagagtga cggggatcaa gaagaattgt cagcacttgt ggagaggggg caccttgttc
61 ctggggatat tgatgatctg tagtgctgca gaaaatttgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcatat
181 gatacagagg tacataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca
241 caagaagtag tattgggaaa tgtgacagaa aaatttaaca tgtggaaaaa taacatggta
301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa
361 ttaaccccac tctgtgttac tttaaattgc actgatttga ggaatgctac taataccact
421 agtagtagcg ggggagcgat ggagggagga gaaataaaaa actgctcttt taatatcacc
481 acaagcatga gagataaggt gcagaaagaa tatgcattat tttataagct tgatgtagta
541 ccaatagata atgataatac tagtaccagc tataggttga taagttgcaa cacctcagtc
601 attacacagg cctgtccaaa ggtatccttt gagccaattc ccatacatta ttgtgccccg
661 gctggttttg cgattctaaa gtgtaacgat aaaaagttca agggaacagg atcatgtaaa
721 aatgtcagca cagtacaatg tacacatgga attaggccag tagtatcaac tcaactgctg
781 ttaaatggca gtctagcaga agaagaggta gtaataagat ctgacaattt caaggacaat
841 gctaaaatca taatagtaca gctgaatgaa actgtagaaa ttaattgtac aagacccaac
901 aacaatacaa gaaaaagtat acatatagga ccagggagag cattttatac aacaggagaa
961 ataataggag atataagaca agcacattgt aacattagta aagcaaaatg ggataacact
1021 ttaaaacaga tagcaagaaa attaaaagaa caatttgaga ataaaacaat agcctttaac
1081 caatcctcag gaggggaccc agaaattgta atgcacagtt ttaattgtgg aggggaattt
1141 ttctactgta attcaacaca actgtttaat agtacttgga atggtactga aaggttaaat
1201 aacactggag aaaatatcac aatcacactc ccatgcagaa taagacaaat cataaacatg
1261 tggcaggaag taggaaaagc aatgtatgcc cctcccatca gaggacaaat tagatgttca
1321 tcaaatatta cagggctgct attaacaaga gatggtggta atagcacgaa cgggactgag
1381 accttcagac ctggaggagg agatatgagg gacaattgga gaagtgaatt atataaatat
1441 aaagtagtaa aaattgaacc attaggatta gcacccacca aggcaaagag aagagtggtg
1501 cagagagaaa aaagagcagt gggaatagga gctgtgttcc ttgggttctt gggagcagca
1561 ggaagcacta tgggcgcagc gtcaatgacg ctgacggtac aggccagact attattgtct
1621 ggtatagtgc aacagcagaa caatttgctg agagctattg aggcgcaaca gcatctgttg
1681 caactcacag tctggggcat caagcagctc caggcaagag tcctggctgt ggaaagatac
1741 ctaaaggatc aacagctcct ggggatttgg ggttgctctg gaaaactcat ttgcaccact
1801 gctgtgcctt ggaatgctag ttggagtaat aaatctctgg aaaaaatttg gaataacatg
1861 acctggatgg agtgggaaag agaaattcac aattacacaa gcttaatata caacctaatt
1921 gaagaatcgc agaaccaaca agaaaagaat gaacaagaat tattggaatt agataaatgg
1981 gcaagtttgt ggaattggtt tgacataaca aaatggctgt ggtacataaa aatattcata
2041 atgatagtag gaggcttggt aggtttaaga ataattttta ctgtattttc tatagtgaat
2101 agagttaggc agggatactc accattatcg tttcagaccc acctcccagc cccgagggga
2161 cccgacaggc ccgaaggaat cggagaagaa ggtggagagc aagacagaga cagatccgat
2221 cgcttagtga ctggattctt agcacttttc tgggtcgacc tgcggagcct gtgcctcttc
2281 agctaccacc gcttgagaga cttactcttg attgtaacga ggattgtgga acttctggga
2341 cgcagggggt gggaaatcct caaatattgg tggaatctcc tgcagtattg gagtcaggaa
2401 ctaaagaata gtgctgttag cttgctcaat gccacagcca tagcagtagc tgaagggaca
2461 gatagggtta tagaagtatt acaaagagct tttagagctg ttctcaacat acctaccaga
2521 ataagacagg gcttggaaag ggctttgcta taa
//
last modified: Tue May 31 10:56 2022