View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JQ609688 2646 bp DNA linear VRL 25-MAR-2012
DEFINITION HIV-1 isolate 45_01dG6 from USA envelope glycoprotein (env) gene,
complete cds
ACCESSION JQ609688
VERSION JQ609688.1 GI:380718112
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2646)
Show all sequences for reference 1
AUTHORS Wu,X., Wang,C., O'Dell,S., Li,Y., Keele,B.F., Yang,Z., Imamichi,H.,
Doria-Rose,N., Hoxie,J.A., Connors,M., Shaw,G.M., Wyatt,R.T. and
Mascola,J.R.
TITLE Selection Pressure on HIV-1 Envelope by Broadly Neutralizing
Antibodies to the Conserved CD4-Binding Site.
JOURNAL J. Virol.. 86(10); 5844-56 (2012)
PUBMED 22419808
REFERENCE 2 (bases 1 to 2646)
Show all sequences for reference 2
AUTHORS Wu,X., Wang,C., O'Dell,S., Li,Y., Keele,B., Yang,Z., Imamichi,H.,
Doria-Rose,N., Hoxie,J., Connors,M., Shaw,G., Wyatt,R. and
Mascola,J.
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2012) VRC / NIAID, NIH, 40 Convent Drive,
Bethesda, MD 20910, USA
FEATURES Location/Qualifiers
source 1..2646
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="45_01dG6"
/isolation_source="PBMC"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="30-Jul-2001"
/note="subtype: B"
gene 1..2646
/gene="env"
CDS 1..2646
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFE02254.1"
/db_xref="GI:380718113"
/translation="MRVMGIRKNCQRLWKGGIWFLGVLMICSATEKMWVTVYYGVPVW
KEATTTLFCASDAKAYSTESHNVWATHACVPTDPNPQEVVLKNVTEEFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTDYEGNKATRNTTNAHSTNTTAPTSGPLNN
TTSGSGGAREEREIKNCTFNVTTGMRDKVQKEYALLYKFDIEPIVDDSNENNTSNTRY
RLISCNTSVITQACPKISFEPIPIHYCAPAGFAILKCNDKKFNGTGTCTNVSTVQCTH
GIRPVVSTQLLLNGSLAEEEIIIRSRNLSENADTIIVQLNETVVINCTRPNNNTRRSI
PMGPGKAFFTTGAIIGDIRQAHCNISNATWYKTLKQVARKLREHFNKTIVFNQSTGGD
PEVVMHSFNCGGEFFYCNTTQLFNSTWHGNETEESETTKDNSTVITLPCRIRQIVNRW
QEVGKAMYAPPISGRINCSSNITGLLLTRDGGNITNENTTETFRPGGGNMRDNWRSEL
YKYKVVKIEPLGVAPTKAKRRVVQREKRAAGIGAMFLGFLGAAGSTMGAASLTLTVQA
RLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCS
GKLICTTTVPWNISWSNKTYEQIWDNMTWMDWEREIDNYTGIIYSLIEESQNQQEKNE
QELLALDKWASLWNWFDITKWLWYIKIFIMIVGGLIGLRIIFTVLSIVNRVRQGYSPL
SFQTHLPAPRGPDRPDGIEEEGGEQDRDRSGRLATGFLAIFWVDLRSLCLFSYHRLRD
LLLIVTRIVELLGRRGWEILKYWWNLLQYWSQELKNSAVSLFNATAIAVAEGTDRVIE
IFQRAFRAILNIPTRIRQGLERALL"
BASE COUNT 911 a 463 c 632 g 640 t
ORIGIN
1 atgagagtga tggggatcag gaagaattgt cagcgcttgt ggaaaggggg catctggttc
61 ctaggggtat tgatgatttg tagtgctaca gaaaagatgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcatat
181 agtacagaga gccataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca
241 caagaagtag tattgaaaaa tgtgacagaa gaatttaaca tgtggaaaaa taacatggta
301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa
361 ttaacccccc tctgtgttac tttaaattgc actgattatg agggaaataa ggccactagg
421 aataccacta atgcccatag tactaacact actgccccca ctagtggtcc ccttaataat
481 accactagtg gtagcggggg agcgagggaa gaaagagaaa taaaaaactg cacttttaat
541 gtcaccacag gcatgagaga taaggtgcag aaagaatatg cattgttgta taagtttgat
601 atagaaccaa tagttgatga tagtaatgag aataatacta gtaataccag atataggttg
661 ataagttgta acacctcagt cattacacag gcctgtccaa agatatcctt tgagccaatt
721 cccatacatt attgtgcccc ggctggtttt gcgattctaa agtgtaacga taaaaagttc
781 aatggaacag gaacatgtac aaatgtcagc acagtacaat gcacacatgg aattaggcca
841 gtagtatcaa ctcaactgct gttaaatggc agtctagcag aggaagaaat aataataagg
901 tctagaaatc tctcggaaaa tgctgacacc ataatagtac agctgaatga aactgtagta
961 attaattgta caagacccaa caacaataca agaaggagta tacctatggg gccagggaaa
1021 gcatttttta caacaggagc aataatagga gatataagac aagcacattg taacattagt
1081 aatgcaacat ggtataaaac tttaaaacag gtagcaagaa aattaagaga acattttaat
1141 aaaacaatag tctttaacca atccacagga ggggacccag aagttgttat gcatagtttt
1201 aattgtggag gggaattttt ctactgtaat acaacacaac tgtttaatag cacttggcat
1261 gggaatgaga ctgaagagtc agaaaccact aaagacaata gcacagtaat cactctccca
1321 tgcagaataa gacaaattgt aaaccggtgg caggaagtag ggaaagcaat gtatgcccct
1381 cccatcagcg gacggattaa ctgttcatca aatattactg ggctgctatt aacaagagat
1441 ggtggtaata tcacgaacga gaatactact gagaccttca gacctggagg aggaaatatg
1501 agggacaatt ggagaagtga attatataaa tataaagtag taaaaattga accattagga
1561 gtagcaccca ccaaggcaaa gagaagagtg gtgcagagag aaaaaagagc agcgggaata
1621 ggagctatgt tccttgggtt cttgggagca gcaggaagca ctatgggcgc agcgtcactg
1681 acgctgacgg tacaggccag actactattg tctggtatag tgcaacagca gaataatttg
1741 ctgagagcta ttgaggcgca acagcatctg ttgcaactca cagtctgggg catcaagcag
1801 ctccaagcaa gagtcctggc tgtggaaaga tacctaaggg atcaacagct cctggggatt
1861 tggggttgct ctggaaaact catttgcacc actactgtgc cttggaatat tagttggagt
1921 aataaaactt atgagcaaat ttgggataac atgacctgga tggactggga aagagaaatt
1981 gacaattaca caggcataat atatagctta attgaagaat cgcaaaacca acaagaaaag
2041 aatgaacaag aattattggc attagataaa tgggcaagtt tgtggaattg gtttgacata
2101 acaaaatggc tgtggtacat aaaaatattc ataatgatag taggaggctt aataggttta
2161 agaataattt ttactgtact ttctatagtg aatagagtta ggcagggata ctcaccatta
2221 tcgtttcaga cccacctccc agccccgagg ggacccgaca ggcccgacgg aatcgaagaa
2281 gaaggtggag agcaagacag agacagatcc ggtcgtttag caactggatt cttagcaatt
2341 ttctgggtcg acctgcggag cctgtgcctc ttcagctacc accgcttgag agacttactc
2401 ttgattgtga caaggattgt ggaacttctg gggcgcaggg ggtgggaaat cctcaaatat
2461 tggtggaatc tcctgcagta ttggagtcag gaactaaaga atagtgctgt tagcttgttt
2521 aatgccacag ccatagcagt agctgaaggg acagataggg ttatagaaat atttcaaaga
2581 gcttttaggg ctattctcaa catacctact agaataagac agggcttgga aagggctttg
2641 ctataa
//
last modified: Tue May 31 10:56 2022