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LOCUS JQ479404 249 bp DNA linear VRL 02-APR-2012
DEFINITION HIV-1 isolate env_Q_dur_3 from USA envelope glycoprotein (env)
gene, partial cds
ACCESSION JQ479404
VERSION JQ479404.1 GI:381343206
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 249)
Show all sequences for reference 1
AUTHORS Pillai,S.K., Abdel-Mohsen,M., Guatelli,J., Skasko,M., Monto,A.,
Fujimoto,K., Yukl,S., Greene,W.C., Kovari,H., Rauch,A., Fellay,J.,
Battegay,M., Hirschel,B., Witteck,A., Bernasconi,E.,
Ledergerber,B., Gunthard,H.F. and Wong,J.K.
CONSRTM the Swiss HIV Cohort Study
TITLE Role of retroviral restriction factors in the
interferon-alpha-mediated suppression of HIV-1 in vivo
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 109 (8), 3035-3040 (2012)
PUBMED 22315404
REFERENCE 2 (bases 1 to 249)
Show all sequences for reference 2
AUTHORS Pillai,S.K., Abdel-Mohsen,M., Guatelli,J., Skasko,M., Monto,A.,
Fujimoto,K., Yukl,S., Greene,W.C., Kovari,H., Rauch,A., Fellay,J.,
Battegay,M., Hirschel,B., Witteck,A., Bernasconi,E.,
Ledergerber,B., Gunthard,H.F. and Wong,J.K.
CONSRTM the Swiss HIV Cohort Study
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2012) Medicine/VA Medical Center, University of
California, San Francisco, 4150 Clement St. (111W), San Francisco,
CA 94121, USA
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..249
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="env_Q_dur_3"
/isolation_source="PBMC"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="10-Oct-2010"
gene <1..249
/gene="env"
CDS <1..249
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFG23644.1"
/db_xref="GI:381343207"
/translation="LLIVARIVELLGRRGWEILKYWWNLLQYWSQELKNSAVSLLNAT
AIAVAEGTDRVIEIVRRAFRAIPHIPTRIRQGAERALL"
BASE COUNT 77 a 44 c 69 g 59 t
ORIGIN
1 ctcttgattg tagcgaggat tgtggaactt ctgggacgca gggggtggga aatcctcaaa
61 tattggtgga atctcctaca gtattggagt caggaactaa agaatagtgc tgttagcttg
121 ctcaacgcca cagccatagc agtagctgaa gggacagata gggttataga aatagtaaga
181 agagctttta gagctattcc ccacatacct acaagaataa gacagggcgc ggaaagggct
241 ttgctataa
//
last modified: Tue May 31 10:56 2022