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LOCUS JQ438107 520 bp DNA linear VRL 04-JUN-2012
DEFINITION HIV-1 isolate LCPIS00335 from Senegal envelope glycoprotein (env)
gene, partial cds
ACCESSION JQ438107
VERSION JQ438107.1 GI:388817078
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 520)
Show all sequences for reference 1
AUTHORS Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
TITLE Molecular Epidemiology of HIV-1 Transmission in a Cohort of HIV-1
Concordant Heterosexual Couples from Dakar, Senegal
JOURNAL PLoS ONE 7 (5), E37402 (2012)
PUBMED 22615999
REFERENCE 2 (bases 1 to 520)
Show all sequences for reference 2
AUTHORS Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2012) Department of Biomedical Sciences,
Institute of Tropical Medicine, Nationalestraat 155, Antwerp,
Antwerp 2000, Belgium
FEATURES Location/Qualifiers
source 1..520
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="LCPIS00335"
/isolation_source="peripheral blood mononuclear cells"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Senegal: Dakar"
/collection_date="20-Sep-2006"
gene <1..>520
/gene="env"
CDS <1..>520
/gene="env"
/note="gp41"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFK78979.1"
/db_xref="GI:388817079"
/translation="QLLSGIVQQQSNLLQAIEAQQHLLRLTVWGIKQLQARVLALESY
LRDQQLLGIWGCSGKLICTTTVPWNSSWSNKTYXDIWXXMTWLXWDKEISNYTDRIYD
LIEASQXXQAXNEQDLLALDTWDSLWXWFXXXNXLWYIXIFIMVIGGLIXLXIVFXML
TIINXVXQGYSP"
BASE COUNT 166 a 87 c 107 g 136 t 24 other
ORIGIN
1 gacaattatt gtctggtata gtgcagcagc agagcaattt gctgcaagct atagaggctc
61 aacaacatct gttgagactc acagtctggg gcattaaaca gctccaggca agagtcctgg
121 ctctggaaag ctacctaagg gatcaacagc tcctaggaat ttggggttgc tctggaaaac
181 tcatctgcac caccactgta ccctggaact ctagttggag yaataaaact tataawgaca
241 tatggrakam catgacctgg ctgcratggg ataaagaaat tagtaattac acagacagaa
301 tatatgatct aattgaagca tckcaaamcc wrcaggcaaa kaatgaacaa gacttattgg
361 cattggacac gtgggacagt ctrtggartt ggtttascaw arcaaattrg ctatggtata
421 taarratatt tataatggta ataggaggtt tgatargttt aakaatagtt tttrttatgc
481 ttactataat aaatasagtt asgcagggat actcaccttt
//
last modified: Tue May 31 10:56 2022