HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    JQ438107		     520 bp    DNA     linear	VRL 04-JUN-2012
DEFINITION  HIV-1 isolate LCPIS00335 from Senegal envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   JQ438107
VERSION     JQ438107.1 GI:388817078
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 520)
            Show all sequences for reference 1
  AUTHORS   Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
	    Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
  TITLE     Molecular Epidemiology of HIV-1 Transmission in a Cohort of HIV-1
	    Concordant Heterosexual Couples from Dakar, Senegal
  JOURNAL   PLoS ONE 7 (5), E37402 (2012)
  PUBMED    22615999
REFERENCE   2 (bases 1 to 520)
            Show all sequences for reference 2
  AUTHORS   Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
	    Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2012) Department of Biomedical Sciences,
	    Institute of Tropical Medicine, Nationalestraat 155, Antwerp,
	    Antwerp 2000, Belgium
FEATURES             Location/Qualifiers
     source	     1..520
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="LCPIS00335"
		     /isolation_source="peripheral blood mononuclear cells"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Senegal: Dakar"
		     /collection_date="20-Sep-2006"
     gene	     <1..>520
		     /gene="env"
     CDS	     <1..>520
		     /gene="env"
		     /note="gp41"
		     /codon_start="3"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AFK78979.1"
		     /db_xref="GI:388817079"
		     /translation="QLLSGIVQQQSNLLQAIEAQQHLLRLTVWGIKQLQARVLALESY
		     LRDQQLLGIWGCSGKLICTTTVPWNSSWSNKTYXDIWXXMTWLXWDKEISNYTDRIYD
		     LIEASQXXQAXNEQDLLALDTWDSLWXWFXXXNXLWYIXIFIMVIGGLIXLXIVFXML
		     TIINXVXQGYSP"
BASE COUNT	166 a	  87 c	  107 g    136 t     24 other
ORIGIN
       1 gacaattatt gtctggtata gtgcagcagc agagcaattt gctgcaagct atagaggctc 
      61 aacaacatct gttgagactc acagtctggg gcattaaaca gctccaggca agagtcctgg 
     121 ctctggaaag ctacctaagg gatcaacagc tcctaggaat ttggggttgc tctggaaaac 
     181 tcatctgcac caccactgta ccctggaact ctagttggag yaataaaact tataawgaca 
     241 tatggrakam catgacctgg ctgcratggg ataaagaaat tagtaattac acagacagaa 
     301 tatatgatct aattgaagca tckcaaamcc wrcaggcaaa kaatgaacaa gacttattgg 
     361 cattggacac gtgggacagt ctrtggartt ggtttascaw arcaaattrg ctatggtata 
     421 taarratatt tataatggta ataggaggtt tgatargttt aakaatagtt tttrttatgc 
     481 ttactataat aaatasagtt asgcagggat actcaccttt 
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.