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LOCUS JQ438062 520 bp DNA linear VRL 04-JUN-2012
DEFINITION HIV-1 isolate LCPIS00072 from Senegal envelope glycoprotein (env)
gene, partial cds
ACCESSION JQ438062
VERSION JQ438062.1 GI:388816988
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 520)
Show all sequences for reference 1
AUTHORS Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
TITLE Molecular Epidemiology of HIV-1 Transmission in a Cohort of HIV-1
Concordant Heterosexual Couples from Dakar, Senegal
JOURNAL PLoS ONE 7 (5), E37402 (2012)
PUBMED 22615999
REFERENCE 2 (bases 1 to 520)
Show all sequences for reference 2
AUTHORS Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2012) Department of Biomedical Sciences,
Institute of Tropical Medicine, Nationalestraat 155, Antwerp,
Antwerp 2000, Belgium
FEATURES Location/Qualifiers
source 1..520
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="LCPIS00072"
/isolation_source="peripheral blood mononuclear cells"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Senegal: Dakar"
/collection_date="26-Jul-2005"
gene <1..>520
/gene="env"
CDS <1..>520
/gene="env"
/note="gp41"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFK78934.1"
/db_xref="GI:388816989"
/translation="QLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLALERY
LRDQQLLGIWGCSGKLICTTTVPWNSSWSNKXYTDIWEXMTWLQWDKEISNYTBIIYX
LIEESQNQQEKNEQBLLALDKWASLWSWFDITKWLWYIXIFIMIVGGLIGLRIVFAVL
SIINRVRQGYSP"
BASE COUNT 174 a 84 c 119 g 136 t 7 other
ORIGIN
1 ggcaattatt gtccggtata gtgcaacagc agagcaayct gctgagggct atagaggctc
61 aacagcatct gttgaaactc acggtctggg gcattaaaca gctccaggca agagtcctgg
121 ctctggaaag atacctaagg gatcaacagc tcctaggaat ttggggctgc tctggaaaac
181 tcatctgcac cactactgtg ccctggaact ctagttggag taataaaamt tatactgaca
241 tatgggaama catgacctgg ctacaatggg ataaagaaat tagcaattac acaracataa
301 tatatamttt aattgaagaa tcgcagaacc agcaggaaaa gaatgaacaa ratttattag
361 cattggacaa gtgggcaagt ctgtggagtt ggtttgacat aacaaaatgg ctatggtata
421 taaraatatt tataatgata gtaggaggtt taataggttt aagaatagtt tttgcagtgc
481 tttctataat aaatagagtt aggcagggat actcaccttt
//
last modified: Tue May 31 10:56 2022