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LOCUS JQ438060 520 bp DNA linear VRL 04-JUN-2012
DEFINITION HIV-1 isolate LCPIS00070 from Senegal envelope glycoprotein (env)
gene, partial cds
ACCESSION JQ438060
VERSION JQ438060.1 GI:388816984
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 520)
Show all sequences for reference 1
AUTHORS Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
TITLE Molecular Epidemiology of HIV-1 Transmission in a Cohort of HIV-1
Concordant Heterosexual Couples from Dakar, Senegal
JOURNAL PLoS ONE 7 (5), E37402 (2012)
PUBMED 22615999
REFERENCE 2 (bases 1 to 520)
Show all sequences for reference 2
AUTHORS Jennes,W., Kyongo,J.K., Vanhommerig,E., Camara,M., Coppens,S.,
Seydi,M., Mboup,S., Heyndrickx,L. and Kestens,L.
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2012) Department of Biomedical Sciences,
Institute of Tropical Medicine, Nationalestraat 155, Antwerp,
Antwerp 2000, Belgium
FEATURES Location/Qualifiers
source 1..520
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="LCPIS00070"
/isolation_source="peripheral blood mononuclear cells"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Senegal: Dakar"
/collection_date="26-Jul-2005"
gene <1..>520
/gene="env"
CDS <1..>520
/gene="env"
/note="gp41"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFK78932.1"
/db_xref="GI:388816985"
/translation="QLLSGIVQQQSNLXXAIEAQQHMLRLTVWGIKQLQARVLAVERY
LRDQQLLGIWGCSGKLICTTNVPWNSSWSNKSQNEIWDNMTWLQWDKEISNYTKIIYG
LIEESQNQQEKNEQDLLALDKWASLWTWFDISKWLWYIKIFIMIVGGLIGLRIVXAVI
SIINRVRQGYSP"
BASE COUNT 175 a 77 c 123 g 136 t 9 other
ORIGIN
1 gacaattatt gtctggtata gtgcaacagc agagcaatyt gckrrgggct atagaggctc
61 aacagcatat gttgagactc acagtctggg gcattaaaca actccaggcr agagtcctag
121 ctgtggaaag gtacctaagg gatcaacagc tcctaggaat ttggggttgc tctggaaarc
181 tcatctgcac cactaatgtg ccctggaact ctagttggag taataaatct caaaatgaaa
241 tatgggataa tatgacctgg ctgcaatggg ataaagagat cagyaattac acaaaaataa
301 tatatggtct aattgaggaa tcgcagaacc agcaggaraa gaatgaacaa gacttattgg
361 cattggacaa gtgggcaagt ctgtggactt ggtttgatat atcaaaatgg ttatggtata
421 taaaaatatt tataatgata gtagggggct taataggatt aagaatagtt kttgctgtaa
481 tatctataat aaatagagtt aggcagggat actcaccttt
//
last modified: Tue May 31 10:56 2022