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LOCUS JQ362422 2580 bp DNA linear VRL 24-APR-2012
DEFINITION Human immunodeficiency virus clone 620345.c1 envelope glycoprotein
(env) gene, partial cds
ACCESSION JQ362422
VERSION JQ362422.1 GI:384563942
KEYWORDS .
SOURCE Human immunodeficiency virus
ORGANISM Human immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group; unclassified Primate lentivirus group
REFERENCE 1 (bases 1 to 2580)
Show all sequences for reference 1
AUTHORS Wu,X., Yang,Z.Y., Li,Y., Hogerkorp,C.M., Schief,W.R., Seaman,M.S.,
Zhou,T., Schmidt,S.D., Wu,L., Xu,L., Longo,N.S., McKee,K.,
O'Dell,S., Louder,M.K., Wycuff,D.L., Feng,Y., Nason,M.,
Doria-Rose,N., Connors,M., Kwong,P.D., Roederer,M., Wyatt,R.T.,
Nabel,G.J. and Mascola,J.R.
TITLE Rational design of envelope identifies broadly neutralizing human
monoclonal antibodies to HIV-1
JOURNAL Science 329 (5993), 856-861 (2010)
PUBMED 20616233
REFERENCE 2 (bases 1 to 2580)
Show all sequences for reference 2
AUTHORS Mascola,J. and Wu,X.
TITLE Direct Submission
JOURNAL Submitted (06-JAN-2012) VRC/NIAID, NIH, 40 Convent Drive, Bethesda,
MD 20910, USA
FEATURES Location/Qualifiers
source 1..2580
/organism="Human immunodeficiency virus"
/proviral="Human immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="620345"
/isolation_source="infected PBMCs obtained from the U.S.
Military HIV Research Program"
/host="Homo sapiens"
/db_xref="taxon:12721"
/clone="620345.c1"
/country="Thailand"
/note="subtype: CRF01_AE"
gene 1..>2580
/gene="env"
CDS 1..>2580
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AFI08642.1"
/db_xref="GI:384563943"
/translation="MKVKETQMNWLNLWRWGTLILGLVMICSASDKLWVTVYYGVPVW
RDADTTLFCASDAKVHSTEVHNVWATHACVPTDPNPQEIHLENVTENFNMWQNKMAEQ
MQEDVISLWDQSLKPCIKLTPLCVTLSCTEAKFNETFNKIDNITKVSNLTDEMRNCSF
NMTTELRDKKQQVYALFYKLDIVPIDNSSEYRLINCNTSVIKQACPKVSFDPIPIHYC
TPAGYAILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTHLLLNGSLAEEEIVIRSED
ITKNTKTIIVHLNKSVEINCTRPSNNTRTSVRIGPGQVFYRTGEVITSIRKAYCEING
TKWNETLRQVAKKLKEHFKNKTIIFQPPSGGDLEVTTHHFNCRGEFFYCDTAQLFNST
WRGNETKEERNGTSNDIIILPCRIKQIVRMWQGVGQSMYAPPISGIINCVSNITGILL
TSDGDGGPTADNETFRPAGGDMRDNWRSELYKYKVVQIEPLGIAPTRAKRRVVDREKR
AVGIGAMIFGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEVQQHLLQLT
VWGIKQLQARVLAVERYLKDQKFLGLWGCSGKIICTTAVPWNSTWSNKSYEDIWYNMT
WIEWEREISNYTSQIYEILTESQNQQDRNEKDLLELDKWASLWNWFDITNWLWYIKIF
IMIVGGLIGLRIIFAVLSIVNRVRQGYSPLSLQIPTRHQREPDRPEGIEEGGGEQGRD
RSVRLVSGFLALAWDDLRSLCLFSYHRLRDFILIVARTVELLGRSSLKGLRRGWEGLK
YLGNLLLYWSQELKISAISLLDATAIAVAGWTDRIIEVAQRAWRAFLHIPRRIRQGLE
RALL"
BASE COUNT 894 a 426 c 606 g 654 t
ORIGIN
1 atgaaagtga aggagacaca gatgaattgg ctaaacttgt ggagatgggg aactttgatc
61 cttgggttgg tgatgatttg tagtgcctca gacaaattgt gggttacagt ttattatggg
121 gttcctgtgt ggagagatgc agataccacc ttattttgtg catcagatgc caaagtacat
181 tcaacagaag tgcacaatgt ctgggccaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatac acctggaaaa tgtaacagaa aattttaaca tgtggcaaaa taaaatggca
301 gagcagatgc aggaggatgt aatcagttta tgggatcaaa gtctaaagcc atgtataaag
361 ttaactcctc tctgtgttac tttaagttgt actgaggcta aattcaatga gacttttaac
421 aaaattgata acataactaa ggtctctaac ttgacagatg aaatgagaaa ctgttctttt
481 aatatgacca cagaactaag agataagaag cagcaggtct atgcactttt ttataagctt
541 gacatagtac caattgataa tagtagtgag tataggttaa taaattgtaa tacttcagtc
601 attaagcagg cttgtccaaa ggtatccttt gatccaattc ctatacatta ttgtactcca
661 gctggttatg cgattttaaa gtgtaatgat aaaaatttca atgggacagg gccatgtaaa
721 aatgtcagtt cagtacaatg cacacatgga attaagccag tggtatcaac tcacttactg
781 ttaaatggca gtttagcaga agaagagata gtaatcagat ctgaagatat cacaaaaaat
841 accaaaacca taatagtgca ccttaataaa tctgtagaaa tcaattgtac tagaccctcc
901 aacaatacaa gaacaagtgt aaggatagga ccaggacaag tgttctatag aacaggagaa
961 gtaataacaa gtataagaaa agcatattgt gagattaatg gaacaaaatg gaatgaaact
1021 ttaagacagg tagctaaaaa attaaaagag cactttaaaa ataaaacaat aatctttcaa
1081 ccaccctcag gaggagatct agaagttaca acacatcatt ttaattgtag aggggaattt
1141 ttctattgtg atacagcaca actgtttaat agtacttgga gaggaaatga aaccaaggag
1201 gaaagaaatg gcactagtaa tgacattatc atacttccat gcaggataaa gcaaattgta
1261 agaatgtggc agggagtagg acaatcaatg tatgctcctc ccatcagtgg aataattaat
1321 tgtgtatcaa atattacagg aatactattg acaagtgatg gtgatggtgg tcctactgca
1381 gataacgaga ccttcagacc tgcaggagga gatatgaggg acaattggag aagtgaatta
1441 tataaatata aagtagtaca aattgaacca ctaggaatag cacccaccag ggcaaagaga
1501 agagtggtgg acagagaaaa aagagcagtg ggaataggag ctatgatctt tgggttcttg
1561 ggagcagcag gaagcactat gggcgcagcg tcaataacgc tgacggtaca ggccagacaa
1621 ttattgtctg gtatagtgca acagcaaagc aatttgctga gagctataga ggtgcaacag
1681 catctgttgc aactcacagt ctggggcatt aaacagctcc aggcaagagt cctggctgtg
1741 gaaagatacc taaaggatca aaagttccta ggactttggg gctgctctgg aaaaatcatc
1801 tgcaccactg ctgtgccctg gaactccact tggagtaata aatcttatga agatatttgg
1861 tacaatatga catggataga atgggaaaga gaaattagca attacacaag ccaaatatat
1921 gagatactta cagaatcgca gaaccagcag gacaggaatg aaaaggattt attagaattg
1981 gataaatggg caagtctgtg gaattggttt gacataacaa attggctgtg gtatataaaa
2041 atatttataa tgatagtagg aggtttaata ggtttaagaa taatttttgc tgtgctttct
2101 atagtaaata gagttaggca gggatactca cctttgtctc tccagatccc tacccgtcat
2161 cagagggaac ccgacagacc cgaaggaatc gaagaaggag gtggcgagca aggcagagac
2221 agatccgtgc gattagtgag cggattctta gcacttgcct gggacgatct acggagcctg
2281 tgcctcttca gctaccaccg cttgagagac ttcatattga ttgtagcgag gactgtggaa
2341 cttctgggac gcagcagtct caagggactg agacgggggt gggaaggcct caaatatctg
2401 gggaatcttc tgttatattg gagccaggaa ctaaaaatta gtgctatttc tttgcttgat
2461 gctacagcaa tagcagtagc ggggtggaca gataggatta tagaagtagc acaaagagct
2521 tggagggcct ttctccacat acctagaaga atcagacagg gcttagaaag ggctttgcta
//
last modified: Tue May 31 10:56 2022